Sequence
atgc intronic sequence ATGC exonic sequence...ttcctgtttttgtgttttttgttacccttgcagtttagtgatgattatgacaaacttttgaagtttatttttaatatttctgggtttttttcctggttagGCCGTTGATATATTGAGAACAGACTATGAACCCTCAGATGTGGACATCCTATATGCCGAGGGGGTTACTTCATCCAATGGGCTTGCTTGTGTGGACTTCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0255g00100.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA11G06410.1 (Glycine max), 3'ss of exon 8
ttcctgtttttgtgttttttgttacccttgcagtttagtgatgattatgacaaacttttgaagtttat---ttttaatatttctgggttt-----ttttcctggttagGCCGTTGATATATTGAGAACAGACTATGAACCCTCAGATGTGGACATCCTATATGCCGAGGGGGTTACTTCATCCAATGGGCTTGCTTGTGTGGACTTCT
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-----ctttttttctcctagaaaaagcttg---ttgagttagaatctttaacaacttgtgctgttcatggacattgttgtttctaactatgacaattttctgttttagGCTGTTAAAATATTAAGGACAGATTATGAACCCTCAGATTTAGACATCCTTTATGCTGAGGGAGTTACTTCATCTAATGGGGTGGCTTGTGTGGAGTTTT
upper sequence: Vv07s0255g00100.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA01G38890.1 (Glycine max), 3'ss of exon 9
----ttcctgtttttgtgttttttgttacccttgcagtttagtgatgattatgacaaacttttgaagtttatttttaatatttctgggtttttttcctggttagGCCGTTGATATATTGAGAACAGACTATGAACCCTCAGATGTGGACATCCTATATGCCGAGGGGGTTACTTCATCCAATGGGCTTGCTTGTGTGGACTTCT
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actttttctctcctagaagaagttgttgagttagtatctt--tgacaact-tgtgctgttcatggacactgttgtttctaactatgacaattttctgtt-ttagGCTGTTAAAATATTAAGGACAGATTATGAACTCTCTGATTTAGATATCCTTTATGCCGAGGGAGTTACTTCATCTAATGGGGTGGCTTGTGTGGAGTTTT
upper sequence: Vv07s0255g00100.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA02G06910.1 (Glycine max), 3'ss of exon 12
ttcctgtttttgtgttttttgttacccttgcagtttagtgatgattatgacaaacttttgaagtttatttttaatatttctgggtttttttcctggttagGCCGTTGATATATTGAGAACAGACTATGAACCCTCAGATGTGGACATCCTATATGCCGAGGGGGTTACTTCATCCAATGGGCTTGCTTGTG-TGGACTTCT----------------------------------------------------------------
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----------------------------------------------------------gttagtggctttgagaaactaacattccaattctttgtttaggctgttgagatattgaggactgattatgaaccctcggatttagatatcctctatgctgaaggagttacttcatccaatgggatggcttctggtagAGTTTTCATTTCCTCGGCCAGCTCCTGAGGAAACTGTCGACACTGCCGATCTACATGATTCTTTAGTTAG
upper sequence: Vv07s0255g00100.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA16G25990.1 (Glycine max), 3'ss of exon 9
-ttcctgtttttgtgttttttgttacccttgcagtttagtgatgattatgacaaacttttgaagtttatttttaatatttctgggtttttttcctggttagGCCGTTGATATATTGAGAACAGACTATGAACCCTCAGATGTGGACATCCTATATGCCGAGGGGGTTACTTCATCCAATGGGCTTGCTTGTGTGGACTTCT
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tttgcaaaatttgcactatt-attttcttaatgtttcctttataaaaaaagtttgttgggttagtggctttgagaaactaacattccaattctttgtttagGCTGTTGAGATACTGAGGACTGAGTATGAACCCTCGGATTTAGATATCCTCTATGCTGAAGGAGTTACTTCATCCAATGGGATGGCTTCTGTAGAGTTTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatgacaaacttttgaagtttatttttaatatttctgggtttttttcctggttagGCCGTTGATATATTGAGAACAGACTATGAACCCTCAGATGTGGACATCCTATATGCCGAGGGGGTTACTTCATCCAATGGGCTTGCTTGTGTGGACTTCT
ttttaat putative branch site (score: 3)
tttttttcctggtt putative PPT
aaacttttgaagttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttcctgtttttgtgttttttgttacccttgcagtttagtgatgattatgacaaacttttgaagtttatttttaatatttctgggtttttttcctggttagGCCGTTGATATATTGAGAACAGACTATGAACCCTCAGATGTGGACATCCTATATGCCGAGGGGGTTACTTCATCCAATGGGCTTGCTTGTGTGGACTTCT
ttcctgt
- - - - - - - - - - - - -ccttgca
- - - - - - - - - - - - - - - - - - - - - - - - gacaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttctgg