Sequence
atgc intronic sequence ATGC exonic sequence...agttgtatgtactggtcacttttatttctcttccttttttctttttgttgttcgaagatgtggcatctccaatcaaagacggttttccaacatttttcagATGCCTGATGCTGTGGTTGATTATGACTTGTCAACTGGAATGTGGAATATCATTCAACAGAAAAATATGCTTCATGAAAGAACACGAATTCTGTATGGAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0255g00060.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA16G26000.1 (Glycine max), 3'ss of exon 6
agttgtatgtactggtcacttttatttctcttccttttttctttttgttgttcgaagatgtggc--atctccaatcaaagacggttttccaaca----tttttcagATGCCTGATGCTGTGGTTGATTATGACTTGTCAACTGGAATGTGGAATATCATTCAACAGAAAAATATGCTTCATGAAAGAACACGAATTCTGTATGGAA
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-----ta-gcacaattcaatacaaattacaatgtacatttgcatttcaacctagaagaaagacccaatcaccaaatcctgatatgctcaccacaagtttcttgcagATGCCAGATGCTGTGGTTGATTATGACCTGGCCACAGGTAAGTGGAACATCATTCAACAGCAAAATATGCTTCATGACCGGACAAGAATACTGTATGGTA
upper sequence: Vv07s0255g00060.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA02G06940.1 (Glycine max), 3'ss of exon 6
agttgtatgtactggtcacttttatttctcttccttttttctttttgttgttcgaagatgtggcatctccaatcaaagacggttttccaaca---tttttcagATGCCTGATGCTGTGGTTGATTATGACTTGTCAACTGGAATGTGGAATATCATTCAACAGAAAAATATGCTTCATGAAAGAACACGAATTCTGTATGGAA
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---taagagtgcagtacaattcaatacaaagtacattgcatttcaacctagaagaaagacctgatcataaaatcctgatatgttcaccataagtttcttgcagATGCCAGATGCTGTGGTTGATTATGACCTGGCCACAGGTAAGTGGAACATCATTCAACAGCAAAATGTGCTTCATGACAGGACAAGAATACTGTATGGTA
upper sequence: Vv07s0255g00060.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT5G66960.1 (Arabidopsis thaliana), 3'ss of exon 7
agttgtatgtactggtcacttttatttctcttccttttttctttttgttgttcgaagatgtggcatctccaatcaaagacggttttccaacatttttcagATGCCTGATGCTGTGGTTGATTATGACTTGTCAACTGGAATGTGGAATATCATTCAACAGAAAAATATGCTTCATGAAAGAACACGAATTCTGTATGGAA
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----------gtaggagaaca--attcctcatgctatttctgcttctgta---gatagtttttttttttgcgttttagatactttt-----gtcctgcagATGCCTGATGCAGTGGTTGATTACGATCTATTAAATGGAAAATGGAATATAGTACAGCAGCAAAACATGCTTCACGAAAGAACACGGGTTTTATATGGCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgttgttcgaagatgtggcatctccaatcaaagacggttttccaacatttttcagATGCCTGATGCTGTGGTTGATTATGACTTGTCAACTGGAATGTGGAATATCATTCAACAGAAAAATATGCTTCATGAAAGAACACGAATTCTGTATGGAA
catttttc CT-rich tract
aacattttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agttgtatgtactggtcacttttatttctcttccttttttctttttgttgttcgaagatgtggcatctccaatcaaagacggttttccaacatttttcagATGCCTGATGCTGTGGTTGATTATGACTTGTCAACTGGAATGTGGAATATCATTCAACAGAAAAATATGCTTCATGAAAGAACACGAATTCTGTATGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - -tatgtac
- - - - - - - - - - - - - -ctcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaatca