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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttcactaggccttattattgcatcatgaatctgtgatatgaatctcatctgaaaatgccccttattatttcatgcagAGAATTCTCAGTGTTCAGTATTCCATTCCAAGCTCTGTTCAAATATCTACCGAGTGTCACCACCTGATCTCAAGGATATTTGTTGCTGACCCTGGAGCG

Basic information

species Vitis vinifera
transcript Vv07s0197g00080.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0197g00080.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA01G39020.1 (Glycine max), 3'ss of exon 7
---------gtatttcactaggccttattattgcatcatgaatctgtgatatgaatctcatctgaaaatgccccttattatttcatgcagAGAATTCTCAGTGTTCAGTATTCCATTCCAAGCTCTGTTCAAATATCTACCGAGTGTCACCACCTGATCTCAAGGATATTTGTTGCTGACCCTGGAGCG
          ||||| |         ||  || | | |  |     || |       | | |  ||  ||       |  || | |||||||  |||||||||| |||||||||||||||  |  ||||||| ||||| | ||||||| |||||| ||||||||||| ||||||  |||||||| || |
gttgatctgatatttaagatatttgcatgttttctttacaagctcctggtt---gcgtgagcacaacctgttttggttggttccttgcagAGGGTTCTCAGTGTCCAGTATTCCATTCCAGACAATGTTCAAGTATCTCCTGAGTGTCGCCACCTTATCTCAAGGATCTTTGTTTTTGACCCTGCAGAG

upper sequence: Vv07s0197g00080.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA11G06250.1 (Glycine max), 3'ss of exon 7
---------gtatttcactaggccttattattgcatcatgaatctgtgatatgaatctcatctgaaaatgccccttattatttcatgcagAGAATTCTCAGTGTTCAGTATTCCATTCCAAGCTCTGTTCAAATATCTACCGAGTGTCACCACCTGATCTCAAGGATATTTGTTGCTGACCCTGGAGCG
          ||||| |         ||  || | | |  |  || || |       | | |  ||  ||       |  || | |||||||  |||||||||| |||||||||||||||  |  ||||||| | ||| | ||||||| |||||| ||||||||||| ||||||  |||||||| || |
gttgatctaatatttaagatatttgcatgttttctttacaagcctctggtt---gcgtgagcacaacctgttttggttggttccttgcagAGGGTTCTCAGTGTCCAGTATTCCATTCCAGACAATGTTCAAGTTTCTCCTGAGTGTCGCCACCTTATCTCAAGGATCTTTGTTTTTGACCCTGCAGAG

upper sequence: Vv07s0197g00080.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA17G20610.2 (Glycine max), 3'ss of exon 7
gtatttc----actaggccttattattgcatcatgaatctgtgatatg-aatctcatctgaaaatgccccttattatttcat-gcagAGAATTCTCAGTGTTCAGTATTCCATTCCAAGCTCTGTTCAAATATCTACCGAGTGTCACCACCTGATCTCAAGGATATTTGTTGCTGACCCTGGAGCG-
|||  ||    | || |   | |  |    |  |  ||  |   | |   ||  | |  | | | |   ||  ||  ||| | ||||||| |||| ||||| ||||||||||||||   |  ||||||||||||| | ||||||| |||||| || |||||||| ||||||  |||||| | || | 
gtacatcagatattaagatatgtgctcattttcttcattagcagtgtctgattgcttgagtataagttgctgcttgcttctttgcagAGAGTTCTTAGTGTCCAGTATTCCATTCCGGACGGTGTTCAAATATCTCCAGAGTGTCGCCACCTTATTTCAAGGATCTTTGTTTTTGACCCGGCAGAGG

upper sequence: Vv07s0197g00080.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA17G20610.4 (Glycine max), 3'ss of exon 7
gtatttc----actaggccttattattgcatcatgaatctgtgatatg-aatctcatctgaaaatgccccttattatttcat-gcagAGAATTCTCAGTGTTCAGTATTCCATTCCAAGCTCTGTTCAAATATCTACCGAGTGTCACCACCTGATCTCAAGGATATTTGTTGCTGACCCTGGAGCG
|||  ||    | || |   | |  |    |  |  ||  |   | |   ||  | |  | | | |   ||  ||  ||| | ||||||| |||| ||||| ||||||||||||||   |  ||||||||||||| | ||||||| |||||| || |||||||| ||||||  |||||| | || |
gtacatcagatattaagatatgtgctcattttcttcattagcagtgtctgattgcttgagtataagttgctgcttgcttctttgcagAGAGTTCTTAGTGTCCAGTATTCCATTCCGGACGGTGTTCAAATATCTCCAGAGTGTCGCCACCTTATTTCAAGGATCTTTGTTTTTGACCCGGCAGAG

upper sequence: Vv07s0197g00080.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA05G09460.1 (Glycine max), 3'ss of exon 7
---------gtatttcactaggc-cttattattgcatcatg-aatctgtgata---tgaatctcatctgaaaatgccccttattatttcatgcagAGAATTCTCAGTGTTCAGTATTCCATTCCAAGCTCTGTTCAAATATCTACCGAGTGTCACCACCTGATCTCAAGGATATTTGTTGCTGACCCTGGAGCG
          ||||    || |  || ||| ||   |   | | | | ||||    ||| | | |  ||    |||  |||  |  ||  | |||||| |||| ||||| ||||||||||||||   |  ||||||||||||| | ||||||  |||||| ||||||||||| ||||||  |||||| | || |
gtacatcagatattaagatatgtgctcatttttttcttgagtagtgtctgattgcttgagtataacttgtggttgctgcttgcttctt--tccagAGAGTTCTTAGTGTCCAGTATTCCATTCCGGACGGTGTTCAAATATCTCCAGAGTGTGGCCACCTTATCTCAAGGATCTTTGTTTTTGACCCAGCAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatgaatctgtgatatgaatctcatctgaaaatgccccttattatttcatgcagAGAATTCTCAGTGTTCAGTATTCCATTCCAAGCTCTGTTCAAATATCTACCGAGTGTCACCACCTGATCTCAAGGATATTTGTTGCTGACCCTGGAGCG
                                   ccccttattatttc  CT-rich tract
                                       ttattatttcat  TA-rich tract