Sequence
atgc intronic sequence ATGC exonic sequence...atatggaagtagttatgcttctatattttcgtgttttccccccttttctcttagaaaatgtagatagatatttttgaacctaacattttggttgttgcagGATGCACAACAAGAAAGATCAACATTTGTATCATCTTTGCTGCCTCTTCTTGCGGAGTATTCTCTGCAACCACCAGTTGCTGATGCCCAGTCTATTGTTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0130g00420.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA20G35770.1 (Glycine max), 3'ss of exon 9
--------------------------------------------------atatggaag---tagttatgcttctata--ttttcgtgttttccccccttttctcttagaaaatgtagatagatatttttgaacctaacattttggttgttg---cagGATGCACAACAAGAAAGATCAACATTTGTATCATCTTTGCTGCCTCTTCTTGCGGAGTATTCTCTGCAACCACCAGTTGCTGATGCCCAGTCTATTGTTA
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gttatttttcctacttttttcctcactattagtgtggtgtgttaaattttgcatggttgctataagtatatttcaatgagtctccatggacagtaactgttctgttttgtgtttcagaatcaat-ttttaagtttttgcattttctttttctggtcagGATGCACAGCAAGAAAGATCAACATTTGTTTCATCTTTGCTGCCTCTTCTTGCAGAATACTCCCTGCAGCCTCCTGTTCCTGATGCACAATCAATTGTTA
upper sequence: Vv07s0130g00420.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA10G31880.1 (Glycine max), 3'ss of exon 8
----------------------------------------------------atatggaag---tagttatgcttctat--attttcgtgttttccccccttttctcttagaaaatgtagatagatatttttgaacctaacattttggttgttg---cagGATGCACAACAAGAAAGATCAACATTTGTATCATCTTTGCTGCCTCTTCTTGCGGAGTATTCTCTGCAACCACCAGTTGCTGATGCCCAGTCTATTGTTA
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gttatttttcctacttttttcctcattgttggtgtggtgtgtgttaaattttgcatggttgctataagtttttttcaatgagtctccatggacagtaacttgttctgttatgtgtttcagaatcaatttttaagtttttgcattttctttttcttgtcagGATGCACAGCAAGAAAGATCAACATTTGTTTCATCTTTGCTGCCTCTTCTTGCAGAATACTCCCTGCAGCCTCCTGTTCCTGATGCACAATCAATTGTTA
upper sequence: Vv07s0130g00420.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT5G23490.1 (Arabidopsis thaliana), 3'ss of exon 7
atatggaagtagttatgcttctatattttcgtgttttccccccttttctcttagaaaatgt-agatagatatttttgaacctaacatt-ttggttgttgcagGATGCACAACAAGAAAGATCAACATTTGTATCATCTTTGCTGCCTCTTCTTGCGGAGTATTCTCTGCAACCACCAGTTGCTGATGCCCAGTCTATTGTTA
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--ttggataactttatactgcaactggtatatatatatctacgtaaaatctggttaatttttaaatcgaagccaatatgcctgttttcgtttttttttccagGCTACACAGCAAGAAAGATCTACATTTGTATCATACTTGTTACCTCTTTTATCAGAGTATTCTCTGCAACCACAGGTTTCTGATGCTCAGTCTATTGTCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttctcttagaaaatgtagatagatatttttgaacctaacattttggttgttgcagGATGCACAACAAGAAAGATCAACATTTGTATCATCTTTGCTGCCTCTTCTTGCGGAGTATTCTCTGCAACCACCAGTTGCTGATGCCCAGTCTATTGTTA
acctaac putative branch site (score: 2)
aaaatgtagatagata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atatggaagtagttatgcttctatattttcgtgttttccccccttttctcttagaaaatgtagatagatatttttgaacctaacattttggttgttgcagGATGCACAACAAGAAAGATCAACATTTGTATCATCTTTGCTGCCTCTTCTTGCGGAGTATTCTCTGCAACCACCAGTTGCTGATGCCCAGTCTATTGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - -tgcttct
- - - - - - - - - - - - - - - - - - - - - - - - - - agaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacctaa