1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tttcgcttttagtagacatagtttaaaagcattttcccttcacgaggaaactcgtgaatgtgttcttttttagtactgcttatattatcttactccccagCAAGTGTTTGTTGAGTTGGCAAATGATCCAAAGCTTGTATATCACTGCGGACTGACGCCAAGAAAGCTGCCG
species | Vitis vinifera |
transcript | Vv07s0130g00310.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATCTGATTGCCAAAGCTTTGAAGGGGCCACTTGCACCTACACAACAAGAG CAAGTGTTTGTTGAGTTGGCAAATGATCCAAAGCTTGTATATCACTGCGGAEST: gi|110362733|gb|EC926283.1|EC926283
genomic: ATCTGATTGCCAAAGCTTTGAAGGGGCCACTTGCACCTACACAACAAGAGgtgcatacac ... tactccccagCAAGTGTTTGTTGAGTTGGCAAATGATCCAAAGCTTGTATATCACTGCGGA
EST: ATCTGATTGCCAAAGCTTTGAAGGGGCCACTTGCACCTACACAACAAGAG CAAGTGTTTGTTGAGTTGGCAAATGATCCAAAGCTTGTATATCACTGCGGA
genomic: ATCTGATTGCCAAAGCTTTGAAGGGGCCACTTGCACCTACACAACAAGAGgtgcatacac ... tactccccagCAAGTGTTTGTTGAGTTGGCAAATGATCCAAAGCTTGTATATCACTGCGGA
ggaaactcgtgaatgtgttcttttttagtactgcttatattatcttactccccagCAAGTGTTTGTTGAGTTGGCAAATGATCCAAAGCTTGTATATCACTGCGGACTGACGCCAAGAAAGCTGCCG
atcttac putative branch site (score: 3)
ttatcttactcccc CT-rich tract
ttatattatcttact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcgcttttagtagacatagtttaaaagcattttcccttcacgaggaaactcgtgaatgtgttcttttttagtactgcttatattatcttactccccagCAAGTGTTTGTTGAGTTGGCAAATGATCCAAAGCTTGTATATCACTGCGGACTGACGCCAAGAAAGCTGCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - aaaagca
- - - - - - - - - - - - - - - - - -cccttca
- - - - - - - - - - - - - - - - - - - - - - aggaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - -gtgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tactgct