1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gtaatcacatggattttattaatcatgttagtattgttttatctatttatttgttattataaatgataatcatcttctttgatggtgttttgttcttcagAATGCGTTGCGGCAACAAAGATTTGTACGAGAAGTCACAATACAGTACAACTTATGTAATGAACCTTG
species | Vitis vinifera |
transcript | Vv07s0130g00270.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGCTCCAGTGGCTGTTGAGCGTACAATGACTACAAGGGCAGCTGCTTCG AATGCGTTGCGGCAACAAAGATTTGTACGAGAAGTCACAATACAGTACAACEST: gi|110420000|gb|EC986260.1|EC986260
genomic: TTGCTCCAGTGGCTGTTGAGCGTACAATGACTACAAGGGCAGCTGCTTCGgtattacatc ... tgttcttcagAATGCGTTGCGGCAACAAAGATTTGTACGAGAAGTCACAATACAGTACAAC
EST: TTGCTCCAGTGGCTGTTGAGCGTACAATGACTACAAGGGCAGCTGCTTCG AATGCGTTGCGGCAACAAAGATTTGTACGAGAAGTCACAATACAGTACAACEST: gi|110717059|gb|EE092582.1|EE092582
genomic: TTGCTCCAGTGGCTGTTGAGCGTACAATGACTACAAGGGCAGCTGCTTCGgtattacatc ... tgttcttcagAATGCGTTGCGGCAACAAAGATTTGTACGAGAAGTCACAATACAGTACAAC
EST: TTGCTCCAGTGGCTGTTGAGCGTACAATGACTACAAGGGCAGCTGCTTCG AATGCGTTGCGGCAACAAAGATTTGTACGAGAAGTCACAATACAGTACAAC
genomic: TTGCTCCAGTGGCTGTTGAGCGTACAATGACTACAAGGGCAGCTGCTTCGgtattacatc ... tgttcttcagAATGCGTTGCGGCAACAAAGATTTGTACGAGAAGTCACAATACAGTACAAC
tttatttgttattataaatgataatcatcttctttgatggtgttttgttcttcagAATGCGTTGCGGCAACAAAGATTTGTACGAGAAGTCACAATACAGTACAACTTATGTAATGAACCTTG
ctttgat putative branch site (score: 5)
ttttgttcttc putative PPT
ttattataaatgataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatcacatggattttattaatcatgttagtattgttttatctatttatttgttattataaatgataatcatcttctttgatggtgttttgttcttcagAATGCGTTGCGGCAACAAAGATTTGTACGAGAAGTCACAATACAGTACAACTTATGTAATGAACCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - tcacatg
- - - - - - - - - - - tcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatggtg