1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...acctttgcctactagctacaagctgcatgtacttttgtatgttgtatttgacttttgttgtaatgtagtgatcttaaacgtttcgtccttttggttacagCACTGAAGTTGGACCATGCAAGGGTGATTGACACTGCATTTATCTACAAATATGAGAACCAACCTATTAACAGAAGACCTTCTTTGAACAATCTGTGCAA
species | Vitis vinifera |
transcript | Vv07s0129g01120.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATCACATGGAGCTGTTTTAGTTGGTCACAGTTTGCATAATGATCTGAAAG CACTGAAGTTGGACCATGCAAGGGTGATTGACACTGCATTTATCTACAAAT
genomic: ATCACATGGAGCTGTTTTAGTTGGTCACAGTTTGCATAATGATCTGAAAGgttggttaag ... ttggttacagCACTGAAGTTGGACCATGCAAGGGTGATTGACACTGCATTTATCTACAAAT
atttgacttttgttgtaatgtagtgatcttaaacgtttcgtccttttggttacagCACTGAAGTTGGACCATGCAAGGGTGATTGACACTGCATTTATCTACAAATATGAGAACCAACCTATTAACAGAAGACCTTCTTTGAACAATCTGTGCAA
atttgac putative branch site (score: 4)
cgtttcgtcctttt putative PPT
atcttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acctttgcctactagctacaagctgcatgtacttttgtatgttgtatttgacttttgttgtaatgtagtgatcttaaacgtttcgtccttttggttacagCACTGAAGTTGGACCATGCAAGGGTGATTGACACTGCATTTATCTACAAATATGAGAACCAACCTATTAACAGAAGACCTTCTTTGAACAATCTGTGCAA
- - -tgcctac
- - - - - - - - -acaagct
- - - - - - - - - - - - gcatgta
- - - - - - - - - - - - - - - - - -tgtatgt