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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttcaacgtgaatttctccagcatgtggttaatccactatcactcaatgaaagctaggattacattaaaatattaccttccgtgggaacataaaggaatgtgaaggtttcattcttctccataagtaagatttaagtcacaccacaaacaagtgatatcaacagaaattaatgtgtcagttcatttgtctgcagGCACAGCAGAAAGCCGTGGTCCAAATTTATCCATGCAGACAATCAGCATCTAGTTTCTCCAGAG

Basic information

species Vitis vinifera
transcript Vv07s0129g00410.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0129g00410.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA11G05340.1 (Glycine max), 3'ss of exon 7
gtatgttcaacgtgaatttctccagcatgtggttaatccactatcactcaatgaaagctaggattacattaaaatattaccttccgtgggaacataaaggaatgtgaaggtttcattcttctccataagtaagatttaagtcacaccacaaacaagtgatatcaacagaaattaatgtgtcagttcatttgt--ctgcagGCACAGCAGAAAGCCGTGGTCCAAATTTATCCATGCAGACAATCAGCATCTAGTTTCTCCAGAG
                                                                                                  |    ||   | |||  ||   ||  ||   |  | |   ||  | |  |      |||||  |  ||| |  ||||| ||| |    ||||     ||||| |||||  |||| || ||||||||||||||| ||||||| ||||||||||| || ||||| |||
--------------------------------------------------------------------------------------------------gatgcgtcctgctttgttttgactttattt-tctgttggtagataaatgaagtgttagtgac-ttgacacattttaatatgtaatgctattttctgttgcagACACAGTCGAAAACCCTGGTCCAAATTTATCAATGCAGATAATCAGCATCTTGTGTCTCCTGAG

upper sequence: Vv07s0129g00410.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA11G05340.2 (Glycine max), 3'ss of exon 7
gtatgttcaacgtgaatttctccagcatgtggttaatccactatcactcaatgaaagctaggattacattaaaatattaccttccgtgggaacataaaggaatgtgaaggtttcattcttctccataagtaagatttaagtcacaccacaaacaagtgatatcaacagaaattaatgtgtcagttcatttgtc--tgcagGCACAGCAGAAAGCCGTGGTCCAAATTTATCCATGCAGACAATCAGCATCTAGTTTCTCCAGAG------------------------------------
                                                                                                  |    ||   | |||  ||   ||  ||   |  | |   ||  | |  |      |||||  |  ||| |  ||||| ||| |    ||||     ||||| |||||  |||| || ||||||||||||||| ||||||| ||||||||||| || ||||| |||                                    
--------------------------------------------------------------------------------------------------gatgcgtcctgctttgttttgactttattt-tctgttggtagataaatgaagtgttagtgac-ttgacacattttaatatgtaatgctattttctgttgcagACACAGTCGAAAACCCTGGTCCAAATTTATCAATGCAGATAATCAGCATCTTGTGTCTCCTGAGGTGACTCTTCAGTTTTCCTATCTGGCATTGACCTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30305031|gb|CB981825.1|CB981825
EST:     AACAAATATCGTTTAGAGCTCGATCCTCAACTTGATGCTCTTGTTGGGAG                         GCACAGCAGAAAGCCATGGTCCAAATTTATCCATGCAGACAATCAGCATCT
genomic: AACAAATATCGTTTAGAGCTCGATCCTCAACTTGATGCTCTTGTTGGGAGgtatgttcaa ... ttgtctgcagGCACAGCAGAAAGCCGTGGTCCAAATTTATCCATGCAGACAATCAGCATCT
EST: gi|110729560|gb|EE105636.1|EE105636
EST:     AACAAATATCGTTTAGAGCTCGATCCTCAACTTGATGCTCTTGTTGGGAG                         GCACAGCAGAAAGCCATGGTCCAAATTTATCCATGCAGACAATCAGCATCT
genomic: AACAAATATCGTTTAGAGCTCGATCCTCAACTTGATGCTCTTGTTGGGAGgtatgttcaa ... ttgtctgcagGCACAGCAGAAAGCCGTGGTCCAAATTTATCCATGCAGACAATCAGCATCT
EST: gi|37187892|gb|CF607243.1|CF607243
EST:     AACAAATATCGTTTAGAGCTCGATCCTCAACTTGATGCTCTTGTTGGGAG                         GCACAGCAGAAAGCCGTGGTCCAAATTTATCCATGCAGACAATCAGCATCT
genomic: AACAAATATCGTTTAGAGCTCGATCCTCAACTTGATGCTCTTGTTGGGAGgtatgttcaa ... ttgtctgcagGCACAGCAGAAAGCCGTGGTCCAAATTTATCCATGCAGACAATCAGCATCT
EST: gi|352773413|gb|FQ472195.1|FQ472195
EST:     AACAAATATCGTTTAGAGCTCGATCCTCAACTTGATGCTCTTGTTGGGAG                         GCACAGCAGAAAAGCCGTGGT
genomic: AACAAATATCGTTTAGAGCTCGATCCTCAACTTGATGCTCTTGTTGGGAGgtatgttcaa ... ttgtctgcagGCACAGCAGAAA-GCCGTGGT
EST: gi|30127890|gb|CB913229.1|CB913229
EST:     AACAAATATCGTTTAGAGCTCGATCCTCAACTTGATGCTCTTGTTGGGAG                         GCACAGCAGAAAGCCGTGGTCCAAATTTATCCATGCAGACAATCAGCATCT
genomic: AACAAATATCGTTTAGAGCTCGATCCTCAACTTGATGCTCTTGTTGGGAGgtatgttcaa ... ttgtctgcagGCACAGCAGAAAGCCGTGGTCCAAATTTATCCATGCAGACAATCAGCATCT
EST: gi|110364239|gb|EC923655.1|EC923655
EST:     AACAAATATCGTTTAGAGCTCGATCCCCAACTTGATGCTCTTGTTGGGAG                         GCACAGCAGAAAGCCATGGTCCAAATTTATCCATGCAGACAATCAGCATCT
genomic: AACAAATATCGTTTAGAGCTCGATCCTCAACTTGATGCTCTTGTTGGGAGgtatgttcaa ... ttgtctgcagGCACAGCAGAAAGCCGTGGTCCAAATTTATCCATGCAGACAATCAGCATCT
EST: gi|110365854|gb|EC929354.1|EC929354
EST:     AACAAATATCGTTTAGAGCTCGATCCTCAACTTGATGCTCTTGTTGGGAG                         GCACAGCAGAAAGCCATGGTCCAAATTTATCCATGCAGACAATCAGCATCT
genomic: AACAAATATCGTTTAGAGCTCGATCCTCAACTTGATGCTCTTGTTGGGAGgtatgttcaa ... ttgtctgcagGCACAGCAGAAAGCCGTGGTCCAAATTTATCCATGCAGACAATCAGCATCT
EST: gi|351030908|gb|FQ438944.1|FQ438944
EST:     AACAAATATCGTTTAGAGCTCGATCCTCAACTTGATGCTCTTGTTGGGAG                         GCACAGCAGAAAGCCGTGGTCCAAATTTATCCATGCAGACAATCAGCATCT
genomic: AACAAATATCGTTTAGAGCTCGATCCTCAACTTGATGCTCTTGTTGGGAGgtatgttcaa ... ttgtctgcagGCACAGCAGAAAGCCGTGGTCCAAATTTATCCATGCAGACAATCAGCATCT
EST: gi|110417189|gb|EC983224.1|EC983224
EST:     AACAAATATCGTTTAGAGCTCGATCCTCAACTTGATGCTCTTGTTGGGAG                         GCACAGCAGAAAGCCATGGTCCAAATTTATCCATGCAGACAATCAGCATCT
genomic: AACAAATATCGTTTAGAGCTCGATCCTCAACTTGATGCTCTTGTTGGGAGgtatgttcaa ... ttgtctgcagGCACAGCAGAAAGCCGTGGTCCAAATTTATCCATGCAGACAATCAGCATCT
EST: gi|30304903|gb|CB981697.1|CB981697
EST:     AACAAATATCGTTTAGAGCTCGATCCTCAACTTGATGCTCTTGTTGGGAG                         GCACAGCAGAAAGCCATGGTCCAAATTTATCCATGCAGACAATCAGCATTT
genomic: AACAAATATCGTTTAGAGCTCGATCCTCAACTTGATGCTCTTGTTGGGAGgtatgttcaa ... ttgtctgcagGCACAGCAGAAAGCCGTGGTCCAAATTTATCCATGCAGACAATCAGCATCT
EST: gi|110423934|gb|EC990287.1|EC990287
EST:     AACAAATATCGTTTAGAGCTCGATCCTCAACTTGATGCTCTTGTTGGGAG                         GCACAGCAGAAAGCCATGGTCCAAATTTATCCATGCAGACAATCAGCATCT
genomic: AACAAATATCGTTTAGAGCTCGATCCTCAACTTGATGCTCTTGTTGGGAGgtatgttcaa ... ttgtctgcagGCACAGCAGAAAGCCGTGGTCCAAATTTATCCATGCAGACAATCAGCATCT
EST: gi|110731135|gb|EE109011.1|EE109011
EST:     AACAAATATCGTTTAGAGCTCGATCCTCAACTTGATGCTCTTGTTGGGAG                         GCACAGCAGAAAGCCATGGTCCAAATTTATCCATGCAGACAATCAGCATCT
genomic: AACAAATATCGTTTAGAGCTCGATCCTCAACTTGATGCTCTTGTTGGGAGgtatgttcaa ... ttgtctgcagGCACAGCAGAAAGCCGTGGTCCAAATTTATCCATGCAGACAATCAGCATCT
EST: gi|110374218|gb|EC938850.1|EC938850
EST:     AACAAATATCGTTTAGAGCTCGATCCTCAACTTGATGCTCTTGTTGGGAG                         GCACAGCAGAAAGCCATGGTCCAAATTTATCCATGCAGACAATCAGCATCT
genomic: AACAAATATCGTTTAGAGCTCGATCCTCAACTTGATGCTCTTGTTGGGAGgtatgttcaa ... ttgtctgcagGCACAGCAGAAAGCCGTGGTCCAAATTTATCCATGCAGACAATCAGCATCT
EST: gi|110692539|gb|EE071897.1|EE071897
EST:     AACAAATATCGTTTAGAGCTCGATCCTCAACTTGATGCTCTTGTTGGGAG                         GCACAGCAGAAAGCCATGGTCCAAATTTATCCATGCAGACAATCAGCATCT
genomic: AACAAATATCGTTTAGAGCTCGATCCTCAACTTGATGCTCTTGTTGGGAGgtatgttcaa ... ttgtctgcagGCACAGCAGAAAGCCGTGGTCCAAATTTATCCATGCAGACAATCAGCATCT
EST: gi|352772933|gb|FQ470548.1|FQ470548
EST:     AACAAATATCGTTTAGAGCTCGATCCTCAACTTGATGCTCTTGTTGGGAG                         GCACAGCAGAAAGCCGTGGTCCAAATT
genomic: AACAAATATCGTTTAGAGCTCGATCCTCAACTTGATGCTCTTGTTGGGAGgtatgttcaa ... ttgtctgcagGCACAGCAGAAAGCCGTGGTCCAAATT
EST: gi|110361331|gb|EC924797.1|EC924797
EST:     AACAAATATCGTTTAGAGCTCGATCCTCAACTTGATGCTCTTGTTGGGAG                         GCACAGCAGAAAGCCATGGTCCAAATTTATCCATGCAGACAATCAGCATCT
genomic: AACAAATATCGTTTAGAGCTCGATCCTCAACTTGATGCTCTTGTTGGGAGgtatgttcaa ... ttgtctgcagGCACAGCAGAAAGCCGTGGTCCAAATTTATCCATGCAGACAATCAGCATCT
EST: gi|110384058|gb|EC948472.1|EC948472
EST:     AACAAATATCGTTTAGAGCTCGATCCTCAACTTGATGCTCTTGTTGGGAG                         GCACAGCAGAAAGCCATGGTCCAAATTTATCCATGCAGACAATCAGCATCT
genomic: AACAAATATCGTTTAGAGCTCGATCCTCAACTTGATGCTCTTGTTGGGAGgtatgttcaa ... ttgtctgcagGCACAGCAGAAAGCCGTGGTCCAAATTTATCCATGCAGACAATCAGCATCT
EST: gi|254915687|gb|GR905118.1|GR905118
EST:     AACAAATATCGTTTAGAGCTCGATCCTCAACTTGATGCTCTTGTTGGGAG                         GCACAGTAGAAAGCCGTGGTCCAAATTTATCCATGCAGACAATCAGCATCT
genomic: AACAAATATCGTTTAGAGCTCGATCCTCAACTTGATGCTCTTGTTGGGAGgtatgttcaa ... ttgtctgcagGCACAGCAGAAAGCCGTGGTCCAAATTTATCCATGCAGACAATCAGCATCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caccacaaacaagtgatatcaacagaaattaatgtgtcagttcatttgtctgcagGCACAGCAGAAAGCCGTGGTCCAAATTTATCCATGCAGACAATCAGCATCTAGTTTCTCCAGAG
                          aattaat  putative branch site (score: 3)
                                        ttcattt  putative PPT
                       agaaattaat  TA-rich tract