Sequence
atgc intronic sequence ATGC exonic sequence...caactttttctttggtaaaggaaaaataagtagaaatatcacaactagaaggtgctatgttcggttttaacatgactcatcattcttcttgctaacttagGTAAAAAGCCGTTTCACCACTGGTGCTGCTTCAAGATCCTTCACCTCCACCTCTTATGATCCTGTCACAAAAAATGAATTTGAATATATCAAAGTCGAGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0129g00040.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os03g10400.2 (Oryza sativa), 3'ss of exon 7
caactttttctttggtaaaggaaaaataagtagaaatatcacaactagaaggtgctatgttcggttttaacatgactcatcat---tcttcttgctaacttagGTAAAAAGCCGTTTCACCACTGGTGCTGCTTCAAGATCCTTCACCTCCACCTCTTATGATCCTGTCACAAAAAATGAATTTGAATATATCAAAGTCGAGA
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----gtacactttcgtat--------catctcaatgtattttgtctggtttgtgttacatacgcagtggattttctctgatggagatgattcaatgatttcagGTTAAAAGCCGTTACACCACAGGAGCAGCTTCACGTTCTTTCACATCAACTGCCTATGATCCTGTCACCAAAAATGAACTTGAGTATGTTAAGGTTGAAA
upper sequence: Vv07s0129g00040.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA11G05130.1 (Glycine max), 3'ss of exon 7
--caactttttctttggtaaaggaaaaataagtagaaatatcacaactagaaggtgctatgttcggttttaacatgactcatcattcttcttgctaacttagGTAAAAAGCCGTTTCACCACTGGTGCTGCTTCAAGATCCTTCACCTCCACCTCTTATGATCCTGTCACAAAAAATGAATTTGAATATATCAAAGTCGAGA
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aaagacacatgaatggttttatattacatctcttacaaaagagagggaagtaatcactttgctatctattatca--acttctaatgaagttgcctatttcagGTAAAAAGCCGTTTCACAACTGGTGCTGCTTCCCGGTCTTTCACTTCAACATCATTTGATCCAGTTACAAAAAATGAATTTGAGTATGTGAAAGTTGAGA
upper sequence: Vv07s0129g00040.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA01G40170.1 (Glycine max), 3'ss of exon 7
caactttttctttggtaaaggaaaaataagtagaaatatcacaac-tagaaggtgctatgttcggt--tttaacatgactcatcattcttcttgc-taacttagGTAAAAAGCCGTTTCACCACTGGTGCTGCTTCAAGATCCTTCACCTCCACCTCTTATGATCCTGTCACAAAAAATGAATTTGAATATATCAAAGTCGAGA
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----tttcttttgtatctttgtagtacctctggtactattctaatatattatatgatatttttggccgttcaaaaaaaataaaaaatgaagttgcctatttcagGTAAAAAGCCGTTTCACGACTGGTGCTGCTTCCCGGTCTTTCACTTCAACATCATTTGATCCAGTTACAAAAAATGAATTTGAGTATGTGAAAGTTGAGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tagaaggtgctatgttcggttttaacatgactcatcattcttcttgctaacttagGTAAAAAGCCGTTTCACCACTGGTGCTGCTTCAAGATCCTTCACCTCCACCTCTTATGATCCTGTCACAAAAAATGAATTTGAATATATCAAAGTCGAGA
tgctaac putative branch site (score: 1)
tcattcttcttgct CT-rich tract
ttttaacat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
caactttttctttggtaaaggaaaaataagtagaaatatcacaactagaaggtgctatgttcggttttaacatgactcatcattcttcttgctaacttagGTAAAAAGCCGTTTCACCACTGGTGCTGCTTCAAGATCCTTCACCTCCACCTCTTATGATCCTGTCACAAAAAATGAATTTGAATATATCAAAGTCGAGA
- - - - - - - -taaagga
- - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - -agaaata
- - - - - - - - - - - - - - - - - - - tcacaac
- - - - - - - - - - - - - - - - - - - - - - - - - - -gctatgt