Sequence
atgc intronic sequence ATGC exonic sequence...gttgtcatggacttccgtttcactttttgttgataatttggttgttaatgctttccgtaatttccatcttcttaattgtcctttttcatttctcttatagCTGGCTGGGAACTATGATCCTGAGTATGGTGGGTTTGGATCTGCACCAAAGTTTCCTAGGCCAGTTGAGATTCAACTAATGCTTTATCATTATAAAAAGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0104g01480.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA03G36910.1 (Glycine max), 3'ss of exon 7
gttgtcatggacttccgtttcactttttgttgataatttgg-ttgttaatgctttcc---gtaatttccatcttcttaattgtcc--tttttcatttctcttatagCTGGCTGGGAACTATGATCCTGAGTATGGTGGGTTTGGATCTGCACCAAAGTTTCCTAGGCCAGTTGAGATTCAACTAATGCTTTATCATTATAAAAAGT
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---atcttatatcagcatgt-atttgttg--gatgttttgaatccttaaagttatgctgagtgttttgaatcttgaaaaccattcaatctactcttttctttgtagCTCTCTGGGAGCTACGATTCAAAGTTTGGTGGGTTTGGATCTGCACCAAAGTTTCCCAGACCAGTTGAGATAAACTTGATGCTATATCACTCCAAAAAGT
upper sequence: Vv07s0104g01480.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA19G39560.1 (Glycine max), 3'ss of exon 7
gttgtcatggacttccgtttcactttttgttgataatttgg-ttgttaatgctttccgtaatttccatcttcttaattgtcctt-----tttcatttctcttatagCTGGCTGGGAACTATGATCCTGAGTATGGTGGGTTTGGATCTGCACCAAAGTTTCCTAGGCCAGTTGAGATTCAACTAATGCTTTATCATTATAAAAAGT
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------aaattatatcgacatgtatttgttggatgttttgaatcgttaaaattatgctgagtgtttcgaatcttgagtgtcattcaatctactcttttctttgtagCTTTCTGGGAGCTATGATTCAAAGTTTGGTGGTTTTGGATCTGCACCAAAGTTTCCCAGACCAGTTGAGATAAACTTGATGCTATATCACTCCAAAAAGT
upper sequence: Vv07s0104g01480.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT4G03200.1 (Arabidopsis thaliana), 3'ss of exon 7
gttgtcatggacttccgtttcactttttgttgata-atttggttgttaatgctttccgtaatttccatcttcttaattgtcctttttcatttctcttatagCTGGCTGGGAACTATGATCCTGAGTATGGTGGGTTTGGATCTGCACCAAAGTTTCCTAGGCCAGTTGAGATTCAACTAATGCTTTATCATTATAAAAAGT
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gtatgattcgactcgcgg---actctagaaaaatatatatgattgatacatcaacatgaaaag---gtcttct-aacagtgagt----gtttgtgttaaagCTTTCTCGGAGCTATGATTCGGAATTCGGTGGGTTTGGATCTGCACCAAAGTTCCCGAGGCCTGTCGAGATCCAGCTGATGCTTTATCATTACAAAAAGT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taatgctttccgtaatttccatcttcttaattgtcctttttcatttctcttatagCTGGCTGGGAACTATGATCCTGAGTATGGTGGGTTTGGATCTGCACCAAAGTTTCCTAGGCCAGTTGAGATTCAACTAATGCTTTATCATTATAAAAAGT
tcttaat putative branch site (score: 3)
tttccatcttcttaat CT-rich tract
tttttcattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttgtcatggacttccgtttcactttttgttgataatttggttgttaatgctttccgtaatttccatcttcttaattgtcctttttcatttctcttatagCTGGCTGGGAACTATGATCCTGAGTATGGTGGGTTTGGATCTGCACCAAAGTTTCCTAGGCCAGTTGAGATTCAACTAATGCTTTATCATTATAAAAAGT
- - -catggac
- - - - - - - - - - - - - - - - - - - tggttgt
- - - - - - - - - - - - - - - - - - - - - - - - -gctttcc