Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtgtcctcttccaacaccctcccccacctctctctctcactctcttgtatttattatttttttttttttcattttgtgagtaggggtgagggagtggtgtgctgtgggaatgtatggttgcattttttagcattaaaaagttcttggtggtggtatcttgttaattgtttttttttcctccccaaaatttagGTCCACCTGGTGCTAATCTATTTATCTATCACATTCCTCAAGAATTTGGTGATCATGAACTTGCGCATGCCTTCCAACAATTTGGTAGGGTCTTGAGTGC

Basic information

species Vitis vinifera
transcript Vv07s0104g01150.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0104g01150.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os05g30980.1 (Oryza sativa), 3'ss of exon 7
gttggtgtcctcttccaacaccctcccccacctctctctctcactctcttgtatttattatttttttttttttcattttgtgagtaggggtgagggagtggtgtgctgtgggaatgtatg-gttgcattttttagcattaaaaagttcttggtggtggtatcttgttaattgttt---ttttttcctccccaaaatttagGTCCACCTGGTGCTAATCTATTTATCTATCACATTCCTCAAGAATTTGGTGATCATGAACTTGCGCATGCCTTCCAACAATTTGGTAGGGTCTTGAGTGC
                                                                                                               |  ||| |   || || |  | |  ||||     ||    ||   | | ||   || ||| | |   |  |||  |  |     |  |||||| ||||| || ||| |||||||||| ||||| |||||||||||||| || || || |||||   |||||| ||    |||||||| ||  |||||||
---------------------------------------------------------------------------------------------------------------gtttgtctctattacactcctgaaaattagtttattacctgtta-gatctcaaattcattttatagatgattttttttcatgtgtacagGTCCTCCTGGAGCCAATTTATTTATCTACCACATCCCTCAAGAATTTGGCGACCAAGATCTTGCCGGTGCCTTTCAGGGTTTTGGTAGAGTACTGAGTGC

upper sequence: Vv07s0104g01150.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G128809_T01 (Zea mays), 3'ss of exon 8
gttggtgtcctcttccaacaccctcccccacctctctctctcactctcttgtatttattatttttttttttttcattttgtgagtaggggtgagggagtggtgtgctgtgggaatgtatggttgcattttttagcattaaaaagttcttggtggtggtatcttgttaattgtttttttttcctccccaaaatttagGTCCACCTGGTGCTAATCTATTTATCTATCACATTCCTCAAGAATTTGGTGATCATGAACTTGCGCATGCCTTCCAACAATTTGGTAGGGTCTTGAGTGC
                                      |     |||  |||| | |     ||  || || | || || | |||           |||  |||        | | |   |||| ||||    ||||||      | ||    ||  | ||||   |||   | |  | |          ||  ||| || ||||| || ||| | || || ||||||||||| |||||||||||||| ||||| |||||  |||| || ||    |||||||| ||  |||||||
------------------------------------gtttgttttcttctgtactcaccgaattagttgttattatcttttaagtt----------agttttgtttctaacaagtctcaagttgtatttagaggcatta------tgttcaaagttttctcttaacaatgactgtcatgt----------atgcagGCCCTCCTGGAGCCAATTTGTTCATATATCACATTCCACAAGAATTTGGTGACCATGATCTTGCAAATGCATTTCATAGTTTTGGTAGAGTACTGAGTGC

upper sequence: Vv07s0104g01150.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA19G39300.1 (Glycine max), 3'ss of exon 7
gttggtgtcctcttccaacaccctcccccacctctctctctcactctcttgtatttattatttttttttttttcattttgtgagtaggggtgagggagt--ggtgtgctgtggga-atgtatggttgcatttt----ttagcattaaaaagttcttggtggtggtatcttgttaattgttttt----ttttcctccccaaaatttagGTCCACCTGGTGCTAATCTATTTATCTATCACATTCCTCAAGAATTTGGTGATCATGAACTTGCGCATGCCTTCCAACAATTTGGTAGGGTCTTGAGTGC
                                                      || |||| | | | || |   |  | ||| ||     ||  | ||    ||  || ||| | ||||||  ||   ||||    | |   |||           |   || ||  ||| ||||| | |||    ||||    |    || ||||| ||||||||||| || |||||||| |||||||| |||||||||||||| ||||| || |||||   ||| || |||| ||||||||| || ||||||||
-----------------------------------------------------gttgttatctatatcttatatgtgct-tgactataaacgattgtgttcattgatctttggtacatgtatatttatgttttaccatcactcttaccttacaacaagaaatgttactttggtaattctatttctacttttttatcttccaacttagGACCACCTGGTGCGAACCTATTTATTTATCACATACCTCAAGAATTTGGAGATCAAGAGCTTGCTACTGCTTTTCAACCATTTGGTAGAGTTTTGAGTGC

upper sequence: Vv07s0104g01150.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA03G36650.2 (Glycine max), 3'ss of exon 7
gttggtgtcctcttccaacaccctcccccacctctctctctcactctcttgtatttattatttttttttttttcattttgtgagtaggggtgagggagtggtgtgctgtgggaatgtatggttgcattttttagcattaaaaa-gttcttggtggtggtatcttgttaattgtttttttttcctccccaaaatttagGTCCACCTGGTGCTAATCTATTTATCTATCACATTCCTCAAGAATTTGGTGATCATGAACTTGCGCATGCCTTCCAACAATTTGGTAGGGTCTTGAGTGC
                     |   |   |  |   | ||| | |||  ||| |     | | |   |  ||   ||   |   || |  |||   |    | |  | ||   |   ||   |   |  ||||  |  | ||| ||| ||        | | ||  ||||| || ||||||          | | ||| ||||||||||| ||  ||||||| |||||||| |||||||||||||| ||||| || |||||   ||| || |||| ||||||||| || ||||||||
-------------------gtcaggctgaaggttgttatctaaatcttatgtgtgctcaagtataaatgattgtgttcatt---tatgcttgatacacgtatat-ttatgtttaaccatcactctttactttacaacaagaaatgttattttgaaaattctatttctaattattattttttttattttctgactcagGACCACCTGGTGCCAACTTATTTATTTATCACATACCTCAAGAATTTGGAGATCAAGAGCTTGCTACTGCTTTTCAACCATTTGGTAGAGTTTTGAGTGC

upper sequence: Vv07s0104g01150.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA03G36650.1 (Glycine max), 3'ss of exon 7
gttggtgtcctcttccaacaccctcccccacctctctctctcactctcttgtatttattatttttttttttttcattttgtgagtaggggtgagggagtggtgtgctgtgggaatgtatggttgcattttttagcattaaaaa-gttcttggtggtggtatcttgttaattgtttttttttcctccccaaaatttagGTCCACCTGGTGCTAATCTATTTATCTATCACATTCCTCAAGAATTTGGTGATCATGAACTTGCGCATGCCTTCCAACAATTTGGTAGGGTCTTGAGTGC
                                |   | ||| | |||  ||| |     | | |   |  ||   ||   |   || |  |||   |    | |  | ||   |   ||   |   |  ||||  |  | ||| ||| ||        | | ||  ||||| || ||||||          | | ||| ||||||||||| ||  ||||||| |||||||| |||||||||||||| ||||| || |||||   ||| || |||| ||||||||| || ||||||||
-------------------------------gttgttatctaaatcttatgtgtgctcaagtataaatgattgtgttcatt---tatgcttgatacacgtatat-ttatgtttaaccatcactctttactttacaacaagaaatgttattttgaaaattctatttctaattattattttttttattttctgactcagGACCACCTGGTGCCAACTTATTTATTTATCACATACCTCAAGAATTTGGAGATCAAGAGCTTGCTACTGCTTTTCAACCATTTGGTAGAGTTTTGAGTGC

upper sequence: Vv07s0104g01150.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA02G17090.1 (Glycine max), 3'ss of exon 7
gttggtgtcctcttccaacaccctcccccacctctctctctcactctcttgtatttattatttttttttttttcattttgtgagtaggggtgagggagtggtgtgctgtgggaatgtatggttgcattttttagcattaaaaagt-----tcttggtggtggt----atcttgttaattgtttttttttcctccccaaaatttagGTCCACCTGGTGCTAATCTATTTATCTATCACATTCCTCAAGAATTTGGTGATCATGAACTTGCGCATGCCTTCCAACAATTTGGTAGGGTCTTGAGTGC
                                  |   | ||  | |||| ||||| |  | || | | | |  ||    ||  |    ||| |  |      |    | ||  | |     ||  |||  |   |  |  || |     | ||| || |  |    ||   ||||||| ||||  ||||           ||||| ||||||||||| ||||||||||| |||||||| |||||||||| ||| || || || ||  |   ||| || ||||  |||||||| || ||||||||
---------------------------------gttgttatctatatcttatatttgt-gtattctgtgtatagataacatgcatgcatgtgtgtaaaca---tataataggctttttcccatgtctttcctcagagcaggaaatgttagttttgttgataattcaaattccgttaattattttaatttctct-----ggcttagGACCACCTGGTGCCAATCTATTTATTTATCACATACCTCAAGAATATGGAGACCAAGAGCTCACAACTGCATTTCAACCGTTTGGTAGAGTTTTGAGTGC

upper sequence: Vv07s0104g01150.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA10G02700.1 (Glycine max), 3'ss of exon 7
gttggtgtcctcttccaacaccctcccccacctctctctctcactctcttgtatttattatttttttttttttcattttgtgagtaggggtgagggagtggtgtgctgtgggaatgtatggttgcattttttagcattaaaaagttcttggtggtggt----atcttgttaattgtttttttttcctccccaaaatttagGTCCACCTGGTGCTAATCTATTTATCTATCACATTCCTCAAGAATTTGGTGATCATGAACTTGCGCATGCCTTCCAACAATTTGGTAGGGTCTTGAGTGC
                                  |   | ||  | |||| ||||| |   ||  |    |       ||||||||    |     | | |  |  | |    | || |     ||||    |  ||     |||| ||| || |  |    ||  |||||||| ||||  ||||           ||||| ||||||||||| ||||||||||| |||||||| |||||||||| ||| ||  | || || ||     | || ||||  |||||||| || ||||||||
---------------------------------gttgttatctatatcttatatttgtgcattaataacatgcatgcatgtgagtaaacatat---aatagcctttttttcccacgtctttcctcattgcagaaaat--gttagtttttgttgataatccgaattctgttaattattttaatttctct-----ggcttagGACCACCTGGTGCCAATCTATTTATTTATCACATACCTCAAGAATATGGAGACGAAGAGCTCGCAACCACATTTCAACCGTTTGGTAGAGTTTTGAGTGC

upper sequence: Vv07s0104g01150.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA10G02700.3 (Glycine max), 3'ss of exon 6
--gttggtgtcctcttccaacaccctcccccacctctctctctcactctcttgtatttattatttttttttttttcattttgtgagtaggggtgagggagtggtgtgctgtgggaatgtatggttgcattttttagcattaaaaagttcttggtggtggt----atcttgttaattgtttttttttcctccccaaaatttagGTCCACCTGGTGCTAATCTATTTATCTATCACATTCCTCAAGAATTTGGTGATCATGAACTTGCGCATGCCTTCCAACAATTTGGTAGGGTCTTGAGTGC
  |   ||      |||||     |      |    | |     | | |||| ||||| |   ||  |    |       ||||||||    |     | | |  |  | |    | || |     ||||    |  ||     |||| ||| || |  |    ||  |||||||| ||||  ||||           ||||| ||||||||||| ||||||||||| |||||||| |||||||||| ||| ||  | || || ||     | || ||||  |||||||| || ||||||||
gtgccagtaaaag-ttccagtggtcaaattgaaggttgttatcta-tatcttatatttgtgcattaataacatgcatgcatgtgagtaaacatat---aatagcctttttttcccacgtctttcctcattgcagaaaat--gttagtttttgttgataatccgaattctgttaattattttaatttctct-----ggcttagGACCACCTGGTGCCAATCTATTTATTTATCACATACCTCAAGAATATGGAGACGAAGAGCTCGCAACCACATTTCAACCGTTTGGTAGAGTTTTGAGTGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349829854|gb|FQ422167.1|FQ422167
EST:     CTCCCCAACAAATTCAGGTGCCGGTGCAAGTTCGGGGGGTCAGGTTGAAG                         GTCCACCTGGTGCTAATCTATTTATCTATCACATTCCTCAAGAATTTGGTG
genomic: CTCCCCAACAAATTCAGGTGCCGGTGCAAGTTCGGGGGGTCAGGTTGAAGgttggtgtcc ... caaaatttagGTCCACCTGGTGCTAATCTATTTATCTATCACATTCCTCAAGAATTTGGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagttcttggtggtggtatcttgttaattgtttttttttcctccccaaaatttagGTCCACCTGGTGCTAATCTATTTATCTATCACATTCCTCAAGAATTTGGTGATCATGAACTTGCGCATGCCTTCCAACAATTTGGTAGGGTCTTGAGTGC
                     tgttaat  putative branch site (score: 3)
                  tcttgttaattgtttt  CT-rich tract
                tatcttgttaattgtt  TA-rich tract