Sequence
atgc intronic sequence ATGC exonic sequence...ggctaaagttctgttctattttttttcttgagcctggatagttatttcaagtctctatggtacatttgcaaggctactaatcttttgtctctccttgcagCTGGAAACATGCGGCATCTGATTGTTGAGGCTTGTATTGCTAGAAATCTGCTGGATACTTCAGCATATTTGTGGCCAGGCTATGTGAATGGACGCAGCAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0104g00390.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA03G30760.1 (Glycine max), 3'ss of exon 9
ggctaaagttctgttct-attttttttcttgagcctggatagttatttcaagtctctatggtacatttgcaaggctactaatc--ttttgtctctccttgcagCTGGAAACATGCGGCATCTGATTGTTGAGGCTTGTATTGCTAGAAATCTGCTGGATACTTCAGCATATTTGTGGCCAGGCTATGTGAATGGACGCAGCAA
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---catatgtttgttctgaatccctatcttttatgtctttggtgtgcaggtgacacttttttttattttttatttttgtgttcatttttttttttacttgcagCTGGAAACTTGCGACATCTAATTGTTGAGGCTTGTATTGCAAAAAAATTGCTTGATACATCAGCTTATTTATGGCCTGGCTATGTGAATACATGCAGCAA
upper sequence: Vv07s0104g00390.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA19G00780.1 (Glycine max), 3'ss of exon 5
---------------------------ggctaaagttctgttctattttttttcttgagcctggatagttatttcaagtctctatggtacatttgcaaggctactaatcttttgtctctccttgcagCTGGAAACATGCGGCATCTGATTGTTGAGGCTTGTATTGCTAGAAATCTGCTGGATACTTCAGCATATTTGTGGCCAGGCTATGTGAATGGACGCAGCAA
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ttcttctgtttatttttctctcagatgtgttggtctcatacgggtattttcatgtttgtcttgggcccctgatt-atacctctttggtttgtgagtgacagTTC-ATCATCTTGTGTTTTCTTGCAGCTGGTAACTTAAGGCATCTCATTGTTGAGGCTTGTATTGCAAGACATCTGCTTGATACCTCAGCGTATTTCTGGC-------------------------
upper sequence: Vv07s0104g00390.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA05G09220.1 (Glycine max), 3'ss of exon 7
ggctaaagttctgttctattttttt--tcttgagcctggatagttatttcaagtctctatggtacatttgcaaggctactaatcttttgtctctccttgcagCTGGAAACATGCGGCATCTGATTGTTGAGGCTTGTATTGCTAGAAATCTGCTGGATACTTCAGCATATTTGTGGCCAGGCTATGTGAATGGACGCAGCAA
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tgtggtggtctcataagggtattttcatgtttatctcgggctcctgatt-aaacctctttggtttgtgagtgacagttc-atcatcttgtgttttcttgcagCTGGTAACTTAAGGCATCTAATTGTTGAGGCTTGTATTGCAAGACATCTTCTTGATACCTCAGCTTATTTCTGGCCTGGTTATGTGAGCGCACCTTTCAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcaagtctctatggtacatttgcaaggctactaatcttttgtctctccttgcagCTGGAAACATGCGGCATCTGATTGTTGAGGCTTGTATTGCTAGAAATCTGCTGGATACTTCAGCATATTTGTGGCCAGGCTATGTGAATGGACGCAGCAA
tactaat putative branch site (score: 1)
tcttttgtctctcctt CT-rich tract
taatctttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggctaaagttctgttctattttttttcttgagcctggatagttatttcaagtctctatggtacatttgcaaggctactaatcttttgtctctccttgcagCTGGAAACATGCGGCATCTGATTGTTGAGGCTTGTATTGCTAGAAATCTGCTGGATACTTCAGCATATTTGTGGCCAGGCTATGTGAATGGACGCAGCAA
- - - - - - - - - - - - - - - agcctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - ctctatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catttgc