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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactctatcatgcacacatacatgcacatacacacgcagggaaaaagagagtatgaactgtttccccttttgttataatatcaaatcacttcagtgaaactttaattggctttgctttatttctagGATTGGTCTGGTCTAAGTGCAAGCAGCATAGTCTCAGAGCTTTGTGGCTTCATCACTGTTTTATCTGGGACTGCCATATTGCACAGTACCAGAGAGCCAG

Basic information

species Vitis vinifera
transcript Vv07s0031g02960.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g02960.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA05G33020.1 (Glycine max), 3'ss of exon 7
gtactctatcatgcacacatacatgcacatacacacgcagggaaaaagagagtatgaactgtttccccttttgttataatatcaaatcacttcagtgaaactttaattggctttgctttatttctagGATTGGTCTGGTCTAAGTGCAAGCAGCATAGTCTCAGAGCTTTGTGGCTTCATCACTGTTTTATCTGGGACTGCCATATTGCACAGTACCAGAGAGCCAG
                  |||| |   || | |||    | |||||   | || || |  |   |   || || |      |||| |   ||  || || | |   |   ||    ||  | | ||||| |  ||||||| ||||  |||||| || |  |||||||| ||||| ||||||||| |||||||||| ||  | |||||||||||||| ||||||||||
--------------gtttatactttt-cagaaacataatgagaaaatttgtgtgtggaaggagacattttatggt------tcaagtattttttgt-aatcctgcctcctctgcttttcttatttagGACTATTCTGGTCAAAGTATAAGCAGTATTGCATCAGAGCTATGTGGTTTCATCACTATTTTATCTGGAACGACTATATTGCACAGTACAAGAGAGCCAG

upper sequence: Vv07s0031g02960.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA08G00660.1 (Glycine max), 3'ss of exon 4
gtactctatcatgcacacatacatgcacatacacacgcagggaaaaagagagtatgaactgtttccccttttgttataatatcaaatcacttcagtgaaactttaattggctttgctttatttctagGATTGGTCTGGTCTAAGTGCAAGCAGCATAGTCTCAGAGCTTTGTGGCTTCATCACTGTTTTATCTGGGACTGCCATATTGCACAGTACCAGAGAGCCAG
                  |||| |   |  | | ||  |  ||||||    || || |      |   || || |      |||| |   ||  || || | |   |   |     ||  | | ||||| |  | ||||| ||||| |||||| || |  |||||||| ||||| ||||||||| |||||||||| ||  | |||||||||||||| ||||| ||||
--------------gtttatactt---ctcagaaacataatgaaaaaatctgtgtggaagaagacattttatggt------tcaagtattttttgt-aatcctgcctcctccacttttcttatttagGACTATTATGGTCAAAGTGTAAGCAGTATTGCGTCAGAGCTATGTGGTTTCATCACTATTTTATCTGGAACGACTATATTGCACAGTACAAGAGAACCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttataatatcaaatcacttcagtgaaactttaattggctttgctttatttctagGATTGGTCTGGTCTAAGTGCAAGCAGCATAGTCTCAGAGCTTTGTGGCTTCATCACTGTTTTATCTGGGACTGCCATATTGCACAGTACCAGAGAGCCAG
                            ctttaat  putative branch site (score: 4)
                                      ctttgctttatttct  putative PPT
                         aaactttaatt  TA-rich tract