Sequence
atgc intronic sequence ATGC exonic sequencegtgagtttccaattgtacattttcagtttctcatgctggttgtgttctcattttctgacaatgctataattacagGTCCATTTAGCGCCAGGAAGTAAATTTAACTTCCAAAAATATATTAAAAGGTCTTTAGAAGATGACTTCAAGGTGGTTGTGGGGATCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g02240.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA01G36170.1 (Glycine max), 3'ss of exon 7
gtgagt------ttccaattgtacattttcagt-ttctcatgctggttgtgttct-cattttctgacaatgct--ataattacagGTCCATTTAGCGCCAGGAAGTAAATTTAACTTCCAAAAATATATTAAAAGGTCTTTAGAAGATGACTTCAAGGTGGTTGTGGGGATCAG
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gtaagtcaacccttcttatggaacaattatgttcttttcacagtggatttaccttatattgacagtgaattatgaatatatatagGTCCACCTGGCTCCTGGAAGTAAATTTAATTTCCAAAAGTATATCAAAAGATCATTAGAAGATGACTTCAAGGTGGTCGTGGGAGTTAG
upper sequence: Vv07s0031g02240.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA11G09270.1 (Glycine max), 3'ss of exon 7
gtgagt------ttccaattgtacattttcagtttctcatgctggttgtg---ttctcattttctgacaatgc------tataattacagGTCCATTTAGCGCCAGGAAGTAAATTTAACTTCCAAAAATATATTAAAAGGTCTTTAGAAGATGACTTCAAGGTGGTTGTGGGGATCAG
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gtgagtcaacacttcttatagaacaatatgttcttttcttagtggatttacctttcttctatattgactgtgaattatgtgtatatatagGTCCACCTGGCTCCTGGAAGTAAATATAATTTCCAAAAGTTTATCAAAAGATCATTAGAAGATGACTTCAAGGTGGTTGTGGGAGTCAG
upper sequence: Vv07s0031g02240.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA16G21510.1 (Glycine max), 3'ss of exon 7
gtgagtttccaattgtacattttcagtttctcatgctggttgtgttctcattttctgacaatgctataattacagGTCCATTTAGCGCCAGGAAGTAAATTTAACTTCCAAAAATATATTAAAAGGTCTTTAGAAGATGACTTCAAGGTGGTTGTGGGGATCAG
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gtgagtcctactccacaagacatgttcttttaacactgaattttccttcctctttt-acaatgcattatgtgtagGTCCACCTGGCTCCTGGAAGTAAATTTAACTTCCAAAAGTATATCAAAAGATCCTTGGAGGATGACTTCAAGGTAGTTGTTGGAGTCAG
upper sequence: Vv07s0031g02240.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA09G32920.1 (Glycine max), 3'ss of exon 3
gtgagtttccaattgtacattttcagtttctca-tgctggttgtgttctcattttctgacaatgctataattacagGTCCATTTAGCGCCAGGAAGTAAATTTAACTTCCAAAAATATATTAAAAGGTCTTTAGAAGATGACTTCAAGGTGGTTGTGGGGATCAG
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gtgagt--cctactccacaagacatgttctttaacactgaatttgcttccctcttttgacagtgcattatgtgtagGTTCACCTGGCTCCTGGAAGTAAATTTAACTTCCAAAAGTATATCAAAAGATCCTTGGAGGATGACTTCAAGGTAGTTGTTGGAGTCAG
upper sequence: Vv07s0031g02240.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT2G17480.1 (Arabidopsis thaliana), 3'ss of exon 7
gtgagttt--ccaatt-----gtacattt-tcagtttctcatgctggttgtgttctcattttctgacaatgctataatt---acagGTCCATTTAGCGCCAGGAAGTAAATTTAACTTCCAAAAATATATTAAAAGGTCTTTAGAAGATGACTTCAAGGTGGTTGTGGGGATCAG
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gtgagttttttcaacttatgggtccatttgtcaatttagtata-tagtattgatcttgctgagtctctttgttgtggtttatgaagGTTCATTTAGCTCCAGGAAGTCAATTTAACTTCCAAAAATACATTAAAAGATCGTTGGAGGATGATTTCAAGGTAGTCGTTGGAGTCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122688552|gb|EC920354.1|EC920354EST: GGTCTGTTAGTAGGTCTGACTACTTGACATTGCGCAATGGGTTCATCACT GTCCATTTAGCGCCAGGAAGTAAATTTAACTTCCAAAAATATATTAAAAGG
genomic: GGTCTGTTAGTAGGTCTGACTACTTGACATTGCGCAATGGGTTCATCACTgtgagtttcc ... ataattacagGTCCATTTAGCGCCAGGAAGTAAATTTAACTTCCAAAAATATATTAAAAGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttcagtttctcatgctggttgtgttctcattttctgacaatgctataattacagGTCCATTTAGCGCCAGGAAGTAAATTTAACTTCCAAAAATATATTAAAAGGTCTTTAGAAGATGACTTCAAGGTGGTTGTGGGGATCAG
ttctgac putative branch site (score: 2)
tataattaca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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gtgagtttccaattgtacattttcagtttctcatgctggttgtgttctcattttctgacaatgctataattacagGTCCATTTAGCGCCAGGAAGTAAATTTAACTTCCAAAAATATATTAAAAGGTCTTTAGAAGATGACTTCAAGGTGGTTGTGGGGATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG