Sequence
atgc intronic sequence ATGC exonic sequencegtaatcattctgattttgtttgtgtttctttgaaatgtgatttctatttgtgttttgtcaaaattaacttctaatttcactctttttttgctcttagGGCAAGGCAAAGAAAGTTGTCCAGGCACAGAATCTCTGGTTTGAAGTTTTGAAATCCCAGATAGAAACTGGAACCCCCTATATGCTGTTTAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os02g56100.1 (Oryza sativa), 3'ss of exon 7
gtaatcattctgattttgtttgtgtttctttgaaatgtgatttctatttgtgttttgtcaaaattaacttctaatttcactctttttttgctcttagGGCAAGGCAAAGAAAGTTGTCCAGGCACAGAATCTCTGGTTTGAAGTTTTGAAATCCCAGATAGAAACTGGAACCCCCTATATGCTGTTTAAG
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------------------gtaagatgtgtgctgggtgtgcagtttattgaagtaatatctaaag-aatatttg--ttaacctagcatgcaatttcagGGCAAGGCAAAGAAAGTTGTTTCAGCACAGGCGCTCTGGTTTGACATTTTGAAGGCACAGATAGAAACTGGAACACCATATATGCTTTATAAG
upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os06g07210.1 (Oryza sativa), 3'ss of exon 7
gtaatcattctgattttgtttgtgtttctttgaaatgtgattt--ctat-ttgtgttttgtcaaaatt-----aacttctaatttcactctttttttgctcttagGGCAAGGCAAAGAAAGTTGTCCAGGCACAGAATCTCTGGTTTGAAGTTTTGAAATCCCAGATAGAAACTGGAACCCCCTATATGCTGTTTAAG
|| || |||| | |||| | | | ||| | || || | || ||| || | ||| | || | ||||||||||||||||| |||||| || |||| ||||||||||| |||| || | |||||||||||||| || || |||||||| | |||
-----------------------gtaagttggaaacgaaatttaattgtactacagtttattgaagttggaaaagattacaataaca-tagctttgtactttcagGGCAAGGCAAAGAAAATTGTCCCAGCTCAGACCCTCTGGTTTGACATTTTAAAGGCACAGATAGAAACTGGTACACCATATATGCTTTACAAG
upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G304362_T01 (Zea mays), 3'ss of exon 7
gtaatcattctgattttgtttgtgtttctttgaaatgtgatttctatttgtgttttgtcaaaattaacttctaatttca----ctctttttttgctcttagGGCAAGGCAAAGAAAGTTGTCCAGGCACAGAATCTCTGGTTTGAAGTTTTGAAATCCCAGATAGAAACTGGAACCCCCTATATGCTGTTTAAG
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-----------------gtaagctgaaatgtgaactgt-atttgtatgtatgctatattgaaatgggaatgtgctttagtaaccttgctttcttgtttcagGGCAAGGCAAAGAAAGTTGTTCCGGCACAGACCCTTTGGTTTGACATTTTGAAGGCACAGATAGAGACTGGTACACCATATATGCTTTATAAG
upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G340527_T01 (Zea mays), 3'ss of exon 7
gtaatcattctgattttgtttgtgtttctttgaaatgtg-atttctatttgtgttttgtcaaaattaacttctaattt--cactctt--tttttgctcttagGGCAAGGCAAAGAAAGTTGTCCAGGCACAGAATCTCTGGTTTGAAGTTTTGAAATCCCAGATAGAAACTGGAACCCCCTATATGCTGTTTAAG
|| | |||| || |||| ||| | | ||| | |||| | | ||| | ||| ||| || | |||||||||||||||||||||| | ||||||| ||||||||||| ||||||| | || ||||| ||||| || || |||||||| | |||
-----------------gtaagctgaaaagtgaacactgtatttgtatgtacgctttattgaaatgggaatgtgctttactaaccttgctttctggattcagGGCAAGGCAAAGAAAGTTGTTCCTGCACAGACCCTCTGGTTTGACATTTTGAAGGCACAAATAGAGACTGGTACACCTTATATGCTTTACAAG
upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA05G32070.1 (Glycine max), 3'ss of exon 7
-------gtaatcattctgattttgtttgtgtttctttgaaatgtgatttctatttgtgttttg-tcaaaattaacttctaatttcactc---tttttttgctcttagGGCAAGGCAAAGAAAGTTGTCCAGGCACAGAATCTCTGGTTTGAAGTTTTGAAATCCCAGATAGAAACTGGAACCCCCTATATGCTGTTTAAG
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gtaagttttggtctttgtatgttgacctgttttaatgttttgcatgttttgaatattccttttgcttattattgccttgcttttctaaccaaattgatgtgtacatagGGAAAAGCAAAGAAGGTTGTTCAGGCACAGAATCTCTGGTTTGAAATTTTGAAGTCCCAGATAGAAACTGGAACTCCTTACATGCTTTTTAAG
upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA04G39500.1 (Glycine max), 3'ss of exon 7
-----------gtaatcattctgattttgtttgtgtttctttgaaatgtgatttctatttgtgttttgtcaaaattaacttctaatttcac-tctttttttgctcttagGGCAAGGCAAAGAAAGTTGTCCAGGCACAGAATCTCTGGTTTGAAGTTTTGAAATCCCAGATAGAAACTGGAACCCCCTATATGCTGTTTAAG
| ||| | || ||||| || |||||| ||| || || || ||| || | | | || | | | | | || | | ||||| || |||||||| ||||||||||||||||| |||||||||||| || |||| || |||||||||||||||||||| || ||||| ||||||
gtaagtttgatcttcacatgcaaatattgttggtctttctt-gaagtgc---ttttacttgctaattattagtgctttgtttttacaaaatatgtcttataacatgtagGGAAAAGCAAAGAAGGTTGTCCAGGCACAGAACCTCTGGTTTGAAATTCTGAAGTCACAGATAGAAACTGGAACCCCTTACATGCTTTTTAAG
upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA08G15360.1 (Glycine max), 3'ss of exon 7
gtaatcattctgattttgtttgtgtttctttgaaatgtgatttctatttgtgttttg-tcaaaattaacttctaatttcactc---tttttttgctcttagGGCAAGGCAAAGAAAGTTGTCCAGGCACAGAATCTCT--GGTTTGAAGTTTTGAAATCCCAGATAGAAACTGGAACCCCCTATATGCTGTTTAAG
|||| | | | | | | | || ||| |||| ||| || || ||||| | | ||| ||| | || | || | ||| | | ||| || |||||||| ||||| |||||||||||||||| |||||||| ||||||| |||||||||||||||||||| || || || | ||||||
gtaagtttggtctatatatgttggcttgttttgcatgt--tttgaatatgccttttgcttattattgccttgtttttctaaaaaaattaatgtgcacatggggaaaagCAAAGAAGGTTGTTCAGGCACAGAATCTCTCTGGTTTGAAATTTTGAAGTCCCAGATAGAAACTGGAACTCCTTACATATTTTTTAAG
upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA06G15350.1 (Glycine max), 3'ss of exon 7
-----------gtaatcattctgattttgtttgtgtttctttgaaatgtgatttctatttgtgttttgtcaaaattaacttctaatttcac-tctttttttgctcttagGGCAAGGCAAAGAAAGTTGTCCAGGCACAGAATCTCTGGTTTGAAGTTTTGAAATCCCAGATAGAAACTGGAACCCCCTATATGCTGTTTAAG
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gtaagttcattcttcacatgcaaatattgttgggcctttcttgaagtgc---ttttacttgttagttattagtgctttgtttttacaaaatatattttataacacgtagGGAAAAGCAATGAAGGTTGTCCAGGCACAGAGCCTCTGGTTCGAAATTCTGAAGTCACAGATAGAAACCGGAACCCCCTACATGCTTTTTAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161714052|gb|FC064127.1|FC064127EST: ATTGTTGGGGTCAAGAATTTGTGGATCTGTACACCCAGTATGAAAGGGAG GGCAAGGCAAAGAAAGTTGTCCAGGCACAGAATCTCTGGTTTGAAGTTTTG
genomic: ATTGTTGGGGTCAAGAATTTGTGGATCTGTACACCCAGTATGAAAGGGAGgtaatcattc ... ttgctcttagGGCAAGGCAAAGAAAGTTGTCCAGGCACAGAATCTCTGGTTTGAAGTTTTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctatttgtgttttgtcaaaattaacttctaatttcactctttttttgctcttagGGCAAGGCAAAGAAAGTTGTCCAGGCACAGAATCTCTGGTTTGAAGTTTTGAAATCCCAGATAGAAACTGGAACCCCCTATATGCTGTTTAAG
ttctaat putative branch site (score: 2)
cttctaatttcactct CT-rich tract
aaaattaacttctaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaatcattctgattttgtttgtgtttctttgaaatgtgatttctatttgtgttttgtcaaaattaacttctaatttcactctttttttgctcttagGGCAAGGCAAAGAAAGTTGTCCAGGCACAGAATCTCTGGTTTGAAGTTTTGAAATCCCAGATAGAAACTGGAACCCCCTATATGCTGTTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT