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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatatgcttgagctacatattcttatttaatttttttttaattattagttatccttttttttccttttcctgtgcctttctgtttccatcttgaatttgttacattctgataaaagaaatttatgcttatagTTATTCAAATATCTTTGTAACTGCCCCAAGCCCTGATAACTTGAAGACTTTGTTCGAATTCATTTGCAAGGGATTTGATGCACTTGAATACAAG

Basic information

species Vitis vinifera
transcript Vv07s0031g01750.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g01750.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA13G43960.1 (Glycine max), 3'ss of exon 7
gtaatatgcttgagctacatattcttatttaatttttttttaattattagttatccttttttttccttttcctgtgcctttctgtttccatcttgaatttgttacattctgataaaagaaatttatgcttatagTTATTCAAATATCTTTGTAACTGCCCCAAGCCCTGATAACTTGAAGACTTTGTTCGAATTCATTTGCAAGGGATTTGATGCACTTGAATACAAG
                             || | |  |||| |    ||   ||   ||   |   ||    ||||        |    |     | ||| |||   ||| ||     || | | ||  | ||| ||||||||||||||||||||||| || ||||||||||| ||||| || ||||| ||||| ||   ||| || ||||| |||||||| ||||||
----------------------------gtactatgcttttcagacataaagatatcttagatatgttcatttgtg-------atagagaagacaatttttttaggatcttattgggaaactatctg--tgtagGTATTCAAATATCTTTGTAACTGCACCCAGCCCTGATAATTTGAAAACCTTGTTTGAATTTATACTCAAAGGTTTTGAGGCACTTGACTACAAG

upper sequence: Vv07s0031g01750.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA08G15130.1 (Glycine max), 3'ss of exon 7
gtaatatgcttgagctacatattcttatttaatttttttttaattattagttatccttttttttccttttcctgtgcctttctgtttccatcttgaatttgttacattctgataaaagaaatttatgcttatagTTATTCAAATATCTTTGTAACTGCCCCAAGCCCTGATAACTTGAAGACTTTGTTCGAATTCATTTGCAAGGGATTTGATGCACTTGAATACAAG
                                                 ||  |     || |         | |   | | ||  |   |     | || ||  | | |  || |||||| || ||  | ||| ||||||||||||||||| ||||| || |||||||| || ||||| || ||||| || || || |||||||| |||||||| ||| | ||||||
-------------------------------------------------gtactgtgccttctggacagagatatatttatatggatagttgcaacaattcttttagtatcttataagaaaattctg--tgtagGTATTCAAATATCTTTGTGACTGCACCCAGCCCTGAGAATTTGAAAACCTTGTTTGACTTTATATGCAAGGGTTTTGATGCTCTTAACTACAAG

upper sequence: Vv07s0031g01750.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: PP1S93_182V6.1 (Physcomitrella patens), 3'ss of exon 7
----------------------gtaatatgcttgagctacatattcttat--ttaatttttttttaattattagttatccttttttttccttttcctgtgcctttctgtttccatcttgaatttgtta--cattctgataaaagaaatttatg------------cttatagTTATTCAAATATCTTTGTAACTGCCCCAAGCCCTGATAACTTGAAGACTTTGTTCGAATTCATTTGCAAGGGATTTGATGCACTTGAATACAAG
                       | ||   |   |  | |||  |  | |  || |   || ||| |   |    | |   || | | | |     |    ||  |  ||   |    |||||    |   ||| | | | || | | || ||            |  | || || || ||||||||||| || || ||||| ||||| ||||||||||| |||||||||||||| |  ||||| ||||| ||| | ||||| |||
gtatgggtttactttaaataacattatggtcccaacatgcatggttgtgtgtttgagccttgtttgaacttggagtgttaattgtct-catgcaagtaccgctagcaattgaaactgagaattgtacagctattgtcacagaatacacttctgacatggacacttcacacagGTACTCGAATATCTTTGTGACAGCTCCAAGTCCTGAGAACTTGAAGACATTGTTCGAATTCATCTTTAAGGGCTTTGACGCAATGGAATATAAG

upper sequence: Vv07s0031g01750.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: EFJ37113 (Selaginella moellendorffii), 3'ss of exon 7
gtaatatgcttgagctacatattcttatttaatttttttttaattattagttatccttttttttccttttcctgtgcctttctgtttccatcttgaatttgttacattctgataaaagaaatttatgcttatagTTATTCAAATATCTTTGTAACTGCCCCAAGCCCTGATAACTTGAAGACTTTGTTCGAATTCATTTGCAAGGGATTTGATGCACTTGAATACAAG
                                                          |       || |  | || | |   |||||  | |||| || ||  || |              |||| |||  || |||||||| || ||||| || || |||||||| || ||||||||||| ||||| || ||  | ||||| || |||||||||||||| ||||||
---------------------------------------------------------gtaagcgtgttatagtttgtcgtcacgtttctgttttgacttcgtgtcact--------------ttat-cttgaagGTATTCAAACATTTTTGTCACAGCTCCAAGCCCAGAGAACTTGAAGACCTTGTTTGAGTTTGTATGCAAAGGCTTTGATGCACTTGAGTACAAG

upper sequence: Vv07s0031g01750.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: EFJ17984 (Selaginella moellendorffii), 3'ss of exon 7
gtaatatgcttgagctacatattcttatttaatttttttttaattattagttatccttttttttccttttcctgtgcctttctgtttccatcttgaatttgttacattctgataaaagaaatttatgcttatagTTATTCAAATATCTTTGTAACTGCCCCAAGCCCTGATAACTTGAAGACTTTGTTCGAATTCATTTGCAAGGGATTTGATGCACTTGAATACAAG
                                                     |     | ||    |||   || | |||||||||      ||| || ||  ||||              |||| |||  || |||||||| || ||||| || || |||||||| || ||||||||||| ||||| || ||  | ||||| || |||||||||||||| ||||||
----------------------------------------------------gtaagcgtgttatggtttgtcgtacgtttctgttt------tgacttcgtgtcatt--------------ttat-cttgaagGTATTCAAACATTTTTGTCACAGCTCCAAGCCCAGAGAACTTGAAGACCTTGTTTGAGTTTGTATGCAAAGGCTTTGATGCACTTGAGTACAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37189981|gb|CF609330.1|CF609330
EST:     GGTAAATCAGCGGCCCTTGGTCTAGCTGTTGCTGGAGCGATTGCTGCAGG                         TTATTCAAATATCTTTGTAACTGCCCCAAGCCCTGATAACTTGAAGACTTT
genomic: GGTAAATCAGCGGCCCTTGGTCTAGCTGTTGCTGGAGCGATTGCTGCAGGgtaatatgct ... atgcttatagTTATTCAAATATCTTTGTAACTGCCCCAAGCCCTGATAACTTGAAGACTTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctgtttccatcttgaatttgttacattctgataaaagaaatttatgcttatagTTATTCAAATATCTTTGTAACTGCCCCAAGCCCTGATAACTTGAAGACTTTGTTCGAATTCATTTGCAAGGGATTTGATGCACTTGAATACAAG
                           ttctgat  putative branch site (score: 3)
                                ataaaagaaatttatg  TA-rich tract