1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tcttcctgcctgaatatcaagtccaatgctagtgcagtggaattgcccagttgctgagtttatttcctggttcctgattgtttgaaatttaatgtcacagTATTATCTGGAGAAGAACCTCGATGCAAGAGCAAGAGAGCTTGAACGCGAGGCAGAGCTTGATGAGAAGGCCCCTAAAGTAAAAGCCAAATCCAAGATGT
species | Vitis vinifera |
transcript | Vv07s0031g01640.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TAATTGAAGTTAAGGATGGGAATTTACAAGACTATGCAGGAGATTACAAT TATTATCTGGAGAAGAACCTCGATGCAAGAGCAAGAGAGCTTGAACGCGAGEST: gi|110391761|gb|EC956761.1|EC956761
genomic: TAATTGAAGTTAAGGATGGGAATTTACAAGACTATGCAGGAGATTACAATgtaagtgtga ... aatgtcacagTATTATCTGGAGAAGAACCTCGATGCAAGAGCAAGAGAGCTTGAACGCGAG
EST: TAATTGAAGTTAAGGATGGGAATTTACAAGACTATGCAGGAGATTACAAT TATTATCTGGAGAAGAACCTCGATGCAAGAGCAAGAGAGCTTGAACGCGAGEST: gi|56409612|gb|CX017864.1|CX017864
genomic: TAATTGAAGTTAAGGATGGGAATTTACAAGACTATGCAGGAGATTACAATgtaagtgtga ... aatgtcacagTATTATCTGGAGAAGAACCTCGATGCAAGAGCAAGAGAGCTTGAACGCGAG
EST: TAATTGAAGTTAAGGATGGGAATTTACAAGACTATGCAGGAGATTACAAT TATTATCTGGAGAAGAACCTCGATGCAAGAGCAAGAGAGCTTGAACGCGAGEST: gi|352772399|gb|FQ469924.1|FQ469924
genomic: TAATTGAAGTTAAGGATGGGAATTTACAAGACTATGCAGGAGATTACAATgtaagtgtga ... aatgtcacagTATTATCTGGAGAAGAACCTCGATGCAAGAGCAAGAGAGCTTGAACGCGAG
EST: TAATTGAAGTTAAGGATGGGAATTTACAAGACTATGCAGGAGATTACAAT TATTATCTGGAGAAGAACCTCGATGCAAGAGCAAGAGAGCTTGAACGCGAGEST: gi|26261553|gb|CA812616.1|CA812616
genomic: TAATTGAAGTTAAGGATGGGAATTTACAAGACTATGCAGGAGATTACAATgtaagtgtga ... aatgtcacagTATTATCTGGAGAAGAACCTCGATGCAAGAGCAAGAGAGCTTGAACGCGAG
EST: TAATTGAAGTTAAGGATGGGAATTTACAAGACTATGCAGGAGATTACAAT TATTATCTGGAGAAGAACCTCGATGCAAGAGCAAGAGAGCTTGAACACGAGEST: gi|27755077|gb|CB035832.1|CB035832
genomic: TAATTGAAGTTAAGGATGGGAATTTACAAGACTATGCAGGAGATTACAATgtaagtgtga ... aatgtcacagTATTATCTGGAGAAGAACCTCGATGCAAGAGCAAGAGAGCTTGAACGCGAG
EST: TAATTGAAGTTAAGGATGGGAATTTACAAGACTATGCAGGAGATTACAAT TATTATCTGGAGAAGAACCTCGATGCAAGAGCAAGAGAGCTTGAACGCGAGEST: gi|30301899|gb|CB978693.1|CB978693
genomic: TAATTGAAGTTAAGGATGGGAATTTACAAGACTATGCAGGAGATTACAATgtaagtgtga ... aatgtcacagTATTATCTGGAGAAGAACCTCGATGCAAGAGCAAGAGAGCTTGAACGCGAG
EST: TAATTGAAGTTAAGGATGGGAATTTACAAGACTATGCAGGAGATTACAAT TATTATCTGGAGAAGAACCTCGATGCAAGAGCAAGAGAGCTTGAACGCGAGEST: gi|32248178|gb|CD713997.1|CD713997
genomic: TAATTGAAGTTAAGGATGGGAATTTACAAGACTATGCAGGAGATTACAATgtaagtgtga ... aatgtcacagTATTATCTGGAGAAGAACCTCGATGCAAGAGCAAGAGAGCTTGAACGCGAG
EST: TAATTGAAGTTAAGGATGGGAATTTACAAGACTATGCAGGAGATTACAAT TATTATCTGGAGAAGAACCTCGATGCAAGAGCAAGAGAGCTTGAACGCGAGEST: gi|30135054|gb|CB920392.1|CB920392
genomic: TAATTGAAGTTAAGGATGGGAATTTACAAGACTATGCAGGAGATTACAATgtaagtgtga ... aatgtcacagTATTATCTGGAGAAGAACCTCGATGCAAGAGCAAGAGAGCTTGAACGCGAG
EST: TAATTGAAGTTAAGGATGGGAATTTACAAGACTATGCAGGAGATTACAAT TATTATCTGGAGAAGAACCTCGATGCAAGAGCAAGAGAGCTTGAACGCGAG
genomic: TAATTGAAGTTAAGGATGGGAATTTACAAGACTATGCAGGAGATTACAATgtaagtgtga ... aatgtcacagTATTATCTGGAGAAGAACCTCGATGCAAGAGCAAGAGAGCTTGAACGCGAG
cccagttgctgagtttatttcctggttcctgattgtttgaaatttaatgtcacagTATTATCTGGAGAAGAACCTCGATGCAAGAGCAAGAGAGCTTGAACGCGAGGCAGAGCTTGATGAGAAGGCCCCTAAAGTAAAAGCCAAATCCAAGATGT
attgtttgaaatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttcctgcctgaatatcaagtccaatgctagtgcagtggaattgcccagttgctgagtttatttcctggttcctgattgtttgaaatttaatgtcacagTATTATCTGGAGAAGAACCTCGATGCAAGAGCAAGAGAGCTTGAACGCGAGGCAGAGCTTGATGAGAAGGCCCCTAAAGTAAAAGCCAAATCCAAGATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- -tcctgcc
- - - - - - - - - - - ccaatgc
- - - - - - - - - - - - - - - - - - - - - ttgccca
- - - - - - - - - - - - - - - - - - - - - - - - - ttgctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcctga