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gtatgacaatggaaataatggtagcaaatctcttgtattttctgtttgtatggttggatttgcagtgcacatgttagtcgtgcaaactaacactgcttctggtgaatcagGAAATACATGGCAAAAGGAATTAGTGTCTGGTTAGATGTACCTTTGGAAGCCCTGGCGCGGAGAATCTCAGCTGTAGGAACTAATTCTCGACCCCTTTTG
species | Vitis vinifera |
transcript | Vv07s0031g01600.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CATATGGTTGTTTCCACTGGTGGAGGTGCTGTTATTCGGCCTATCAACTG GAAATACATGGCAAAAGGAATTAGTGTCTGGTTAGATGTACCTTTGGAAGCEST: gi|55778155|gb|AJ862939.1|AJ862939
genomic: CATATGGTTGTTTCCACTGGTGGAGGTGCTGTTATTCGGCCTATCAACTGgtatgacaat ... ggtgaatcagGAAATACATGGCAAAAGGAATTAGTGTCTGGTTAGATGTACCTTTGGAAGC
EST: CATATGGTTGTTTCCACTGGTGGAGGTGCTGTTATTCGGGGTATAAACTG GAAATACATGGCAAACGGAATTAGTGTCTGGTTAGATGTACCTEST: gi|71854625|gb|DT003680.1|DT003680
genomic: CATATGGTTGTTTCCACTGGTGGAGGTGCTGTTATTCGGCCTATCAACTGgtatgacaat ... ggtgaatcagGAAATACATGGCAAAAGGAATTAGTGTCTGGTTAGATGTACCT
EST: CATATGGTTGTTTCCACTGGTGGAGGTGCTGTTATTCGGCCTATCAACTG GAAATACATGGCAAACGGAATTAGEST: gi|30131700|gb|CB917039.1|CB917039
genomic: CATATGGTTGTTTCCACTGGTGGAGGTGCTGTTATTCGGCCTATCAACTGgtatgacaat ... ggtgaatcagGAAATACATGGCAAAAGGAATTAG
EST: CATATGGTTGTTTCCACTGGTGGAGGTGCTGTTATTCGGCCTATCAACTG GAAATACATGGCAAAAGGAATTAGTGTCTGGTTAGATGTACCTTTGGAAGCEST: gi|110713219|gb|EE088948.1|EE088948
genomic: CATATGGTTGTTTCCACTGGTGGAGGTGCTGTTATTCGGCCTATCAACTGgtatgacaat ... ggtgaatcagGAAATACATGGCAAAAGGAATTAGTGTCTGGTTAGATGTACCTTTGGAAGC
EST: CATATGGTTGTTTCCACTGGTGGAGGTGCTGTTATTCGGCCTATCAACTG GAAATACATGGCAAAAGGAATCAGTGTCTGGTTAGATGTACCTTTGGAAGCEST: gi|349832444|gb|FQ421005.1|FQ421005
genomic: CATATGGTTGTTTCCACTGGTGGAGGTGCTGTTATTCGGCCTATCAACTGgtatgacaat ... ggtgaatcagGAAATACATGGCAAAAGGAATTAGTGTCTGGTTAGATGTACCTTTGGAAGC
EST: CATATGGTTGTTTCCACTGGTGGAGGTGCTGTTATTCGGCCTATCAACTG GAAATACATGGCAAAAGGAAATAGTGTCTGGTTAGATGTACCTTTGGAAGCEST: gi|161718354|gb|FC065013.1|FC065013
genomic: CATATGGTTGTTTCCACTGGTGGAGGTGCTGTTATTCGGCCTATCAACTGgtatgacaat ... ggtgaatcagGAAATACATGGCAAAAGGAATTAGTGTCTGGTTAGATGTACCTTTGGAAGC
EST: CATATGGTTGTTTCCACTGGTGGAGGTGCTGTTATTCGGCCTATCAACTG GAAATACATGGC
genomic: CATATGGTTGTTTCCACTGGTGGAGGTGCTGTTATTCGGCCTATCAACTGgtatgacaat ... ggtgaatcagGAAATACATGGC
ggatttgcagtgcacatgttagtcgtgcaaactaacactgcttctggtgaatcagGAAATACATGGCAAAAGGAATTAGTGTCTGGTTAGATGTACCTTTGGAAGCCCTGGCGCGGAGAATCTCAGCTGTAGGAACTAATTCTCGACCCCTTTTG
aactaac putative branch site (score: 1)
aaactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgacaatggaaataatggtagcaaatctcttgtattttctgtttgtatggttggatttgcagtgcacatgttagtcgtgcaaactaacactgcttctggtgaatcagGAAATACATGGCAAAAGGAATTAGTGTCTGGTTAGATGTACCTTTGGAAGCCCTGGCGCGGAGAATCTCAGCTGTAGGAACTAATTCTCGACCCCTTTTG
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