Sequence
atgc intronic sequence ATGC exonic sequencegttagtagttctcttcattaactttaagaaatcttaataatctagtcatgaccttccattctgagttctactgacaaattatccctttgttggcagAACAAGAGCGGTTTTCCTCTTCTAGTTAGTGGTGTTCCTCCCGATGCCTTTAGTGAAACTGGCCAGCTGTGGGGCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g01540.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os07g43390.1 (Oryza sativa), 3'ss of exon 7
gttagtagttctcttcattaactttaagaaatcttaataatctagtcatgaccttc---cattctgagttctactgacaaattatcccttt--gttggcagAACAAGAGCGGTTTTCCTCTTCTAGTTAGTGGTGTTCCTCCCGATGCCTTTAGTGAAACTGGCCAGCTGTGGGGCAG
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-------gtacacctcaataattttccctcatagtcatg-tgtcatcggattcttaaaatgctatacattctgtttcttgattgttttttctggtgtaaagGACAAGAATGGTTTTCCGACTTTTGTTAGTGGTGTTCCACCTGATGCATTTAGTGAAACTGGTCAGCTTTGGAACAG
upper sequence: Vv07s0031g01540.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA04G39730.1 (Glycine max), 3'ss of exon 6
gttagtagttctcttcattaactttaagaaatcttaataatctagtcatgaccttc------cattctgagttctactgacaaatt---atccctttgt-tggcagAACAAGAGCGGTTTTCCTCTTCTAGTTAGTGGTGTTCCTCCCGATGCCTTTAGTGAAACTGGCCAGCTGTGGGGCAG
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gttagtagttc-ctaaagaatgtctctgaagtgtgatctgacttttctttttttttggagcatattgtaccttttgatcataaaataatatctatttatctggcagAACAGGAAGGGCTTTCCTCTTTTAGTTAGTGGTGTTCCTCCTGACGCATTCAGTGAAACTGGTCAGCTTTGGGGCAG
upper sequence: Vv07s0031g01540.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA06G15140.1 (Glycine max), 3'ss of exon 6
gttagtagttctcttcattaactttaagaaatcttaataatctagtcatgacct----tccattctgagttctactgacaaatta---tccctttgt-tggcagAACAAGAGCGGTTTTCCTCTTCTAGTTAGTGGTGTTCCTCCCGATGCCTTTAGTGAAACTGGCCAGCTGTGGGGCAG
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gttagcagttc-ctaaagaatgtctcagaagtgtgatctaacctgttcttttttggagcatattgtaccttttgatcataaaataatctctatttatctggcagAACAGGAAGGGCTTTCCTCTTTTAGTTAGTGGTGTTCCTCCTGACGCATTCAGTGAAACCGGCCAGCTCTGGGGCAG
upper sequence: Vv07s0031g01540.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT5G64860.1 (Arabidopsis thaliana), 3'ss of exon 7
gttagtagttctcttcat-taactttaagaaatctta----ataatctagtcatgacctt---ccattctgagttctactgacaaattatccctttgttggcagAACAAGAGCGGTTTTCCTCTTCTAGTTAGTGGTGTTCCTCCCGATGCCTTTAGTGAAACTGGCCAGCTGTGGGGCAG
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gcaagtaaattttaacatatggaggcaaacagttttatcatatgtaccaggaagaaaattagtctttcctgaaagtcgctctttttttgttttgctttacacagAACAAGAAAGGCTTTCCTCTTCTTGTTAGCGGTGTTCCTCCTGACTTGTTCAGTGAAACTGGTCAACTGTGGGGCAG
upper sequence: Vv07s0031g01540.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: EFJ12652 (Selaginella moellendorffii), 3'ss of exon 7
gttagtagttctcttcattaactttaagaaatcttaataatctagtcatgaccttccattctgagttctactgacaaattatccctttgttggcagAACAAGAGCGGTTTTCCTCTTCTAGTTAGTGGTGTTCCTCCCGATGCCTTTAGTGAAACTGGCCAGCTGTGGGGCAG
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-----------------------------------------gtacgcttccattttcttttcaaaaac-aaggacggactcaatatctcgcagGACGAAAAAACATGCGAACCCGTTCTAGTTAGCGGTGTTCCACCCGACTGTTTTAGTGAAACTGGCCAGCTATGGGGAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctagtcatgaccttccattctgagttctactgacaaattatccctttgttggcagAACAAGAGCGGTTTTCCTCTTCTAGTTAGTGGTGTTCCTCCCGATGCCTTTAGTGAAACTGGCCAGCTGTGGGGCAG
tactgac putative branch site (score: 1)
ttatcccttt putative PPT
acaaattat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttagtagttctcttcattaactttaagaaatcttaataatctagtcatgaccttccattctgagttctactgacaaattatccctttgttggcagAACAAGAGCGGTTTTCCTCTTCTAGTTAGTGGTGTTCCTCCCGATGCCTTTAGTGAAACTGGCCAGCTGTGGGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG