Sequence
atgc intronic sequence ATGC exonic sequence...gtgattggataattgctttttgttgaaatccaaaatttctattattttcagatctgcactagaggattaaattatttgtttcttttcaaatgtcattcagGAGGAAATAGTGCCACAGGAGCAATTGCTGGAGGAGTGGCTGCTGGTGCTGCTTTACTGTTTGCTGCACCAGCAATTGGTTTTGCATGGTGGCGGCGGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g01410.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os04g38480.1 (Oryza sativa), 3'ss of exon 7
-------------gtgattggataattgctttt-tgttgaaatccaaaatttctattattttca--gatctgcactagaggattaaattatttgtttcttttcaaatgtcattcagGAGGAAATAGTGCCACAGGAGCAATTGCTGGAGGAGTGGCTGCTGGTGCTGCTTTACTGTTTGCTGCACCAGCAATTGGTTTTGCATGGTGGCGGCGGAG---
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gtgattctctatagttttaattctgttacatttgtgatactgcttgggatatgcatatgcataaatgatgcagacaggggatttgacatattcgggtggaattaattctattccatcagGTGACTCCAAAACTGGAGCAATTGCTGGAGGTGTTGCTGCAGCTGCTGCATTGCTGTTTGCGGTTCCGGCAATTGGATTTGCATGGTGGCGGCGGCGTAA
upper sequence: Vv07s0031g01410.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os08g07760.1 (Oryza sativa), 3'ss of exon 7
----------------------------------gtgattggataattgctttttgttgaaatccaaaatttctattattttcagatctgcactagaggattaaattatttgtttcttttcaa-------atgtcattcagGAGGAAATAGTGCCACAGGAGCAATTGCTGGAGGAGTGGCTGCTGGTGCTGCTTTACTGTTTGCTGCACCAGCAATTGGTTTTGCATGGTGGCGGCGGAG
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gtgagatctgttcatattcacagctgtgcaacagccaacactatgatttttttttgttgcactgacgcgtggtacttatgctggtatggactatggaacatattgttgttgttctgacaataataacctcatgttctatagGGAGTTCATCTAGTACTGGAGCAATTGCTGGTGGAGTGGCTGCTGGAGCAGCCTTGCTATTTGCTATTCCTGCTATTGGTTTTGCATGGTATCGGCGCAG
upper sequence: Vv07s0031g01410.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G384439_T02 (Zea mays), 3'ss of exon 7
-gtgattggataattgctttttgttgaaatccaaaatttctattattttcagatctgcactagaggattaaattatttgtttcttttcaaatgtcattcagGAGGAAATAGTGCCA---CAGGAGCAATTGCTGGAGGAGTGGCTGCTGGTGCTGCTTTACTGTTTGCTGCACCAGCAATTGGTTTTGCATGGTGGCGGCGGAG
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aataactaccttctt-ttttttgtccctaccctgcattagtatggcagtaattaaggctatggaacatatggctttgttactgacatcttattttttgcagGAAGTAGCTCTTCCAGTACTGGAGCAATTGCTGGTGGAGTGGCTGCTGGTGCAGCCTTGCTATTTGCTATTCCTGCAATTAGTTTTGCCTATTGGCGGCG---
upper sequence: Vv07s0031g01410.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G150024_T03 (Zea mays), 3'ss of exon 7
gtgattggataattgctttttgttgaaatccaaaatttctattattttcagatct--gca--ctagaggattaaattatttgtttcttttcaaatgtcattcagGAGGAAATAGTGCCACAGGAGCAATTGCTGGAGGAGTGGCTGCTGGTGCTGCTTTACTGTTTGCTGCACCAGCAATTGGTTTTGCATGGTGGCGGCGGAG---
|| | |||| | | || | | || || | | | | ||| || || || | ||| | | | | |||| | ||| | || | | |||||||| |||||||| || |||||||||||||| || | ||||||| |||||||||| |||||| |||||| || |
--------gtaggt-tttttaatctatttctattctcattactacactaaaactttagcattctggatgac-acattgacactacttcctggattgtctactattagGTGCTTCTGGCCCTGGAGCAATCGCTGGAGGTGTTGCTGCTGGTGCTGCATTGGTTTTTGCTGTTCCAGCAATTGCATTTGCAATGTGGCGCCGTCGTAA
upper sequence: Vv07s0031g01410.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT1G34210.1 (Arabidopsis thaliana), 3'ss of exon 7
--------------------------------------------------------------------------------gtgattggataattgctttttgttgaaatccaaaatttctattattttcaga----tctgcactagaggatta--aattatttgtttcttttcaaatgtcattcagGA-GGAAATAGTGCCACAGGAGCAATTGCTGGAGGAGTGGCTGCTGGTGCTGCTTTACTGTTTGCTGCACCAGCAATTGGTTTTGCATGGTGGCGGCGGAG
|| || | | |||| || || | | ||| | ||| ||| | || | | | | | ||| | ||| | |||| ||| | | || ||||||| || ||||| ||||| |||||||| |||||||||||||||||||| |||||||| || || | | |||||| |||||||| | ||
gtaatgaaatgaagcagacagtaaaatttagatcttttaccttcactcatgcttggaaaaacatattggatggttgttatagagttttttactggattttgactggaaaaaagtctatctcacagtttaagaagcttgtgatcaacttcactggtagttaactattttggtaaaaataaaatttaagGTGGGTATAGTGCTACTGGAGCCATTGCGGGAGGAGTTGCTGCTGGTGCTGCTTTACTATTTGCTGCCCCTGCTTTAGCTTTTGCTTGGTGGCGTAGAAG
upper sequence: Vv07s0031g01410.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT1G71830.1 (Arabidopsis thaliana), 3'ss of exon 7
-------------------------------gtgattggataattgctttttgttgaaatccaaaatttctattattttcagatctgcactagaggattaaattatttgtttcttttcaaatgtcatt-cagGAGGAAATAGTGCCACAGGAGCAATTGCTGGAGGAGTGGCTGCTGGTGCTGCTTTACTGTTTGCTGCACCAGCAATTGGTTTTGCATGGTGGCGGCGGAG
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gtaagcctcctctttttagtttacattataggaaacagaagatgaaatctttgcttc--tctgtcaatcctttttctcatataactcatcttgccaataaggcaataaccaaatgatctaatttgatttcagGTGGGTATGGTATAACTGGAGCAATAGCTGGTGGAGTTGCTGCAGGTGCTGCTTTGCTCTTTGCTGCTCCTGCAATAGCCTTTGCTTGGTGGCGACGAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161716121|gb|FC065843.1|FC065843EST: ATTTTCTCCACCACCTCCATTTGTGCCACCATCTACAGTTTCTTCTCCTG GAGGAAATAGTGCCACAGGAGCAATTGCTGGAGGAGTGGCTGCTGGTGCTG
genomic: ATTTTCTCCACCACCTCCATTTGTGCCACCATCTACAGTTTCTTCTCCTGgtgatccttt ... tgtcattcagGAGGAAATAGTGCCACAGGAGCAATTGCTGGAGGAGTGGCTGCTGGTGCTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttcagatctgcactagaggattaaattatttgtttcttttcaaatgtcattcagGAGGAAATAGTGCCACAGGAGCAATTGCTGGAGGAGTGGCTGCTGGTGCTGCTTTACTGTTTGCTGCACCAGCAATTGGTTTTGCATGGTGGCGGCGGAG
attaaattatttgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgattggataattgctttttgttgaaatccaaaatttctattattttcagatctgcactagaggattaaattatttgtttcttttcaaatgtcattcagGAGGAAATAGTGCCACAGGAGCAATTGCTGGAGGAGTGGCTGCTGGTGCTGCTTTACTGTTTGCTGCACCAGCAATTGGTTTTGCATGGTGGCGGCGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
-tgattgg
- - - - - - - - - - - - - aatccaa
- - - - - - - - - - - - - - - - - - - - - - - - - -atctgca