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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcaaatgtaaattattatttaaatattaattaattatcacattaaaagtctttttcttgatttcaaaacaaagaatttggtctgcatgtaaaattattttgaagttagaaggcaaatccatgcagGCGTACTTGGATTCACAGGAGGGTTTACCAACCTCATTTGAGAACGAGGTTATGGGCTGGTTGCCGGAAAATGGACACAACCATACCCAAATGTTTGGAT

Basic information

species Vitis vinifera
transcript Vv07s0031g01140.t01
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122689411|gb|EC938871.1|EC938871
EST:     NNTATCTACTGAGTAACCATTTATCTACTTACGACCCAGCAAGTATACAG                         GCGTACTTGGATTCACAGGAGGGTTTACCAACCTCATTTGAGAACGAGGTT
genomic: AATATCTACTGAGTAACCATTTATCTACTTACGACCCAGCAAGTATACAGgtatcaaatg ... atccatgcagGCGTACTTGGATTCACAGGAGGGTTTACCAACCTCATTTGAGAACGAGGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagaatttggtctgcatgtaaaattattttgaagttagaaggcaaatccatgcagGCGTACTTGGATTCACAGGAGGGTTTACCAACCTCATTTGAGAACGAGGTTATGGGCTGGTTGCCGGAAAATGGACACAACCATACCCAAATGTTTGGAT
               atgtaaaattattttg  TA-rich tract