Sequence
atgc intronic sequence ATGC exonic sequencegtgattattgttattatttttttttgaagtattggatttgattctttacttgtactgttgaatgcgttacattaatggactgatatgcagGTCAATGATCTTGATTCTTCAGATTCTTCAATGACAAGAGCAACATCTCCGGGTTACTTGCACTATCCTCCTCCTGCAGTATTTTTGGCAAATATTCATT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g04630.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA19G35370.3 (Glycine max), 3'ss of exon 7
gtgatt--attgttattatttttttttgaagtattggatttgattctttacttgtactgttgaatgcgttacattaatggactgatatgcagGTCAATGATCTTGATTCTTCAGATTCTTCAATGACAAGAGCAACATCTCCGGGTTACTTGCACTATCCTCCTCCTGCAGTATTTTTGGCAAATATTCATT
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gtgaatcaactattatgcttttggaatgctattctgaatgttagtttttagattttccctttggt---taacatacttacattgatgtgtagGTCAATGATCTTGATTCTTCAGATTCCTCAATGACAGAGGCTACATCTCTTGGTTATTTACAATATCCTCCGCCTGCTGTTTTTGTCACAAATATTCATC
upper sequence: Vv07s0005g04630.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA03G32620.2 (Glycine max), 3'ss of exon 7
gtgatt--attgttattatttt--tttttgaagtattggatttgattctttacttgtactgttgaa---------tgcgttacattaatggactgatatgcagGTCAATGATCTTGATTCTTCAGATTCTTCAATGACAAGAGCAACATCTCCGGGTTACTTGCACTATCCTCCTCCTGCAGTATTTTTGGCAAATATTCATT
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gtgaatgaactgttatgtttttggttgcctatcaacccaatgctattctgaatgttaatttttggatcttccctttggttaacatacttgtattgatgtgtagGTCAATGATCTTGAGTCTTCAGATTCCTCAATGACGGAGGCGACATCTCTTGGTTATTTACAATATCCTCCGCCTGCTGTTTTTGTCACAAATATTCATC
upper sequence: Vv07s0005g04630.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT1G04140.2 (Arabidopsis thaliana), 3'ss of exon 7
gtgattattgttattatttttttttgaagtattggatttgattctttacttgtactgttgaatgcgttacattaatggactgatatgcagGTCAATGATCTTGATTCTTCAGATTCTTCAATGACAAGAGCAACATCTCCGGGTTACTTGCACTATCCTCCTCCTGCAGTATTTTTGGCAAATATTCATT
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------------gtgagctacatattgaggattgagtt-aatgttctgccact--ttgtgggcttactctattaacta--taaatggcagGTGACTGACATTGATTCATCAGATTCCGCAATGACAAGATCAACATCTCCAGGTTATTTGCGATATCCGCCCCCTGCTATTTTCTTCACCAACACACAAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atttgattctttacttgtactgttgaatgcgttacattaatggactgatatgcagGTCAATGATCTTGATTCTTCAGATTCTTCAATGACAAGAGCAACATCTCCGGGTTACTTGCACTATCCTCCTCCTGCAGTATTTTTGGCAAATATTCATT
gactgat putative branch site (score: 3)
ttacattaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgattattgttattatttttttttgaagtattggatttgattctttacttgtactgttgaatgcgttacattaatggactgatatgcagGTCAATGATCTTGATTCTTCAGATTCTTCAATGACAAGAGCAACATCTCCGGGTTACTTGCACTATCCTCCTCCTGCAGTATTTTTGGCAAATATTCATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG