1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aatggctgaatggtttattttatagcttttttagtaaatgatatttatgtgaagttgaatgttcttacaaaacccttttttccccatctcctggttgcagTTTCTGGATCTCTTTGGAGATGCACAGTCTATCAAGAAGGCTGATGATCGGCATGCCAAGCTTTTCTTACACCATCGAAGTACATCAGAGTTGAAAAAGC
species | Vitis vinifera |
transcript | Vv07s0005g04290.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATGCTGCAAGTGCTGCTGAAAGAGAAGAGCTATCTAGCATCTTTTTGGAA TTTCTGGATCTCTTTGGAGATGCACAGTCTATCAAGAAGGCTGATGATCGGEST: gi|71867577|gb|DT016632.1|DT016632
genomic: ATGCTGCAAGTGCTGCTGAAAGAGAAGAGCTATCTAGCATCTTTTTGGAAgtgagtttta ... ctggttgcagTTTCTGGATCTCTTTGGAGATGCACAGTCTATCAAGAAGGCTGATGATCGG
EST: ATGCTGCAAGTGCTGCTGAAAGAGAAGAGCTATCTAGCATCTTTTTGGAA TT-CTGGATCTCTTTG-AGATGCACAGTCTATCAAGA-GGCTGATGATCG-
genomic: ATGCTGCAAGTGCTGCTGAAAGAGAAGAGCTATCTAGCATCTTTTTGGAAgtgagtttta ... ctggttgcagTTTCTGGATCTCTTTGGAGATGCACAGTCTATCAAGAAGGCTGATGATCGG
tatgtgaagttgaatgttcttacaaaacccttttttccccatctcctggttgcagTTTCTGGATCTCTTTGGAGATGCACAGTCTATCAAGAAGGCTGATGATCGGCATGCCAAGCTTTTCTTACACCATCGAAGTACATCAGAGTTGAAAAAGC
ttcttac putative branch site (score: 2)
cccttttttccccatc putative PPT
ttacaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatggctgaatggtttattttatagcttttttagtaaatgatatttatgtgaagttgaatgttcttacaaaacccttttttccccatctcctggttgcagTTTCTGGATCTCTTTGGAGATGCACAGTCTATCAAGAAGGCTGATGATCGGCATGCCAAGCTTTTCTTACACCATCGAAGTACATCAGAGTTGAAAAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - tgaatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacaaaa