Sequence
atgc intronic sequence ATGC exonic sequence...tgttgttattactattataattattttctgtaaacaactagatatttaacattctgctactgatatgctttcaaaataaatttgtgtggtaatggtccagCTGAAACTGTCATATACAGAATATTTTACTACATCAATAGATCAGGAAATGGTCGTCTTACTCTCAGGGAGCTGAAACGTGGAAATTTAATTGCTGCAAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g03730.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os10g33680.1 (Oryza sativa), 3'ss of exon 6
tgttgttattactattataattattttctgtaaacaactagatatttaacat---tctgctactgatatgctttcaaaataaatttgtgtggtaatggtccagCTGAAACTGTCATATACAGAATATTTTACTACATCAATAGATCAGGAAATGGTCGTCTTACTCTCAGGGAGCTGAAACGTGGAAATTTAATTGCTGCAAT
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tgaggattctacgattggacctggtcaatgactattggtagtgatttgctggatgcctgcatctcattcatctgctaatcg--tttattatgtaatt-ttcagCTGAGACTGTAATATACAGAATCTTTTATTCCATAAATAGAGCTGGAAATGGCCATCTTACCCTCAGAGAGCTAAAACGTGGGAATTTAATTGCTGCGAT
upper sequence: Vv07s0005g03730.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G148323_T01 (Zea mays), 3'ss of exon 6
tgttgttattactattataattattttctgtaaacaactagatatttaacatt-ctgctactgat-atgctttcaaaataaatttgtgtggtaatggtccagCTGAAACTGTCATATACAGAATATTTTACTACATCAATAGATCAGGAAATGGTCGTCTTACTCTCAGGGAGCTGAAACGTGGAAATTTAATTGCTGCAAT
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-aactcaactatctattttgttttaagatcagatttgctgaatgttttgaactgttgctaatgtttgctgtgtcacattcatttcttgatgttttc-ttcagCGGAGACTGTAATATACAGAATCTTTTACTCCATAAATAGATCTGGGAATGGTCATCTGACTCTGAGAGAGCTCAAACGTGGAAATTTAATTGCTGCACT
upper sequence: Vv07s0005g03730.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT1G03960.1 (Arabidopsis thaliana), 3'ss of exon 6
------------------------------------------------------------------tgttgttattactattataattattttctgtaaacaactagatatttaacattctgctactgatatgctttcaaaataaatttgtgtggtaatggtccagCTGAAACTGTCATATACAGAATATTTTACTACATCAATAGATCAGGAAATGGTCGTCTTACTCTCAGGGAGCTGAAACGTGGAAATTTAATTGCTGCAAT
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gtaggaaccattgatttgtgacttactgattgtcatggtgttaaaaatgatgaaacctactcaataagacgttctttctgtgcatacatctttatatct-ctactagatatgtacttatgttagattcatacttgtactaattttaatcctttgttgattacccagCTGAAACGGTCATCTACAGAATATTTTACTACATTAACAGATCCGGAACTGGCTGCCTTACTCTTAGAGAGCTGAGACGTGGAAATTTAATTGCTGCTAT
upper sequence: Vv07s0005g03730.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT5G44090.1 (Arabidopsis thaliana), 3'ss of exon 6
--tgttgttattactattataattattttctgtaaacaactagatatttaacattctgctactgatatgctttcaaaataaatttgtgtggtaatggtccagCTGAAACTGTCATATACAGAATATTTTACTACATCAATAGATCAGGAAATGGTCGTCTTACTCTCAGGGAGCTGAAACGTGGAAATTTAATTGCTGCAAT
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tatattttcag-gtgcttactgttttatacatctattgactaattcataatttttcccgtgcttgttt-cattcatctctgtgttctattccgtcaacccagCTGAGACCGTCATCTACAGAATATTTTACTACATAAACAGATCAGGTACTGGTTGCATTACTCTTAGAGAGCTGAAGCGTGGGAATCTTATTACTGCCAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttaacattctgctactgatatgctttcaaaataaatttgtgtggtaatggtccagCTGAAACTGTCATATACAGAATATTTTACTACATCAATAGATCAGGAAATGGTCGTCTTACTCTCAGGGAGCTGAAACGTGGAAATTTAATTGCTGCAAT
tactgat putative branch site (score: 2)
atatgctttcaaaata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgttgttattactattataattattttctgtaaacaactagatatttaacattctgctactgatatgctttcaaaataaatttgtgtggtaatggtccagCTGAAACTGTCATATACAGAATATTTTACTACATCAATAGATCAGGAAATGGTCGTCTTACTCTCAGGGAGCTGAAACGTGGAAATTTAATTGCTGCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - taaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtgg