Sequence
atgc intronic sequence ATGC exonic sequence...gccacacatgcatccttatatttttctgcaatcttctcatcccaaaagatgggtttcattctcaaataagagtgtcagctctgcttctggttttctgcagATTGTAAATTGGAGAACTCATTTAAAGTTTCCTGAAGAAGCAAGTCTATCTTCCGAAGCAAAAGATCTTATCAGTAAACTTTTGTGTAATGTAAGCCAGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g03690.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA10G04410.2 (Glycine max), 3'ss of exon 8
-gccacacatgcatccttatatttttctgcaatcttctcatcccaaaagatgggtttcattctcaaataagagtgtcagctctgcttctggttttctgcagATTGTAAATTGGAGAACTCATTTAAAGTTTCCTGAAGAAGCAAGTCTATCTTCCGAAGCAAAAGATCTTATCAGTAAACTTTTGTGTAATGTAAGCCAGA
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tgacctacacttagagtagcaaaatcctgttagcttaataactctttttttctttctaaattttatagagcatgctaatctttgtttctc-ttttgtgcagATAGTAAATTGGAAAACTTACTTGAAATTTCCTGAAGAAGCTAGGCTATCCCCAGAAGCTAAAGATCTTATTAGTAAACTTTTGTGTAATGTCAATCAAA
upper sequence: Vv07s0005g03690.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA13G18670.2 (Glycine max), 3'ss of exon 7
gccacacatgcatccttatatttttctgcaatcttctcatcccaaaagatgggtttcattctcaaataagagtgtcagctct-----gcttctggttttctgcagATTGTAAATTGGAGAACTCATTTAAAGTTTCCTGAAGAAGCAAGTCTATCTTCCGAAGCAAAAGATCTTATCAGTAAACTTTTGTGTAATGTAAGCCAGA
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-----attgatatttaaaatgtgttctttaatctttatatttttatgaagtacaagcaatctgatagcaatgcccggattttcagaagttaattcttttgtgcagATAGTAAATTGGAAAACTTACTTGAAATTTCCTGAAGAAGCTAGGCTATCCCCAGAAGCTAAAGATCTTATTAGTAAACTTTTGTGTAATGTCAATCAAA
upper sequence: Vv07s0005g03690.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA19G34920.1 (Glycine max), 3'ss of exon 7
-gccacacatgcatcc-ttatatttttctgcaatcttctcatcccaaaagatgggtttcattctcaaataagagtgtcagctctgcttctggttttctgcagATTGTAAATTGGAGAACTCATTTAAAGTTTCCTGAAGAAGCAAGTCTATCTTCCGAAGCAAAAGATCTTATCAGTAAACTTTTGTGTAATGTAAGCCAGA
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tttgatttcttgaccaattatattgtaaaaaaaaaatagttttagcaattttatgcttaataattcac--aatatatttatctagttccttattttatgtagATAGTAAATTGGAAATCTCACTTAAAATTTCCTGAAGAAGTAAGGTTATCTCCAGAGGCCAAAGATCTTATAAGTAAGCTTTTGTGTAATGTTAATCAAA
upper sequence: Vv07s0005g03690.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA03G32160.1 (Glycine max), 3'ss of exon 7
gccacac-atgcatccttatatttttctgcaatcttctcatcccaaaagatgg--gtttcattctcaaataagagtgtcagctctgcttctggttttctgcagATTGTAAATTGGAGAACTCATTTAAAGTTTCCTGAAGAAGCAAGTCTATCTTCCGAAGCAAAAGATCTTATCAGTAAACTTTTGTGTAATGTAAGCCAGA
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--catgttattttttcatttgattttttaccactcttaaaaataatagtatgaaaattttattttaatacaatacatttatcta-gatccttattttatgtagATAGTAAATTGGAAATCTCACTTAAGATTTCCTGAAGAAGCAAGGTTATCTCCAGAAGCTAAAGATCTTATAAGTAAGCTTTTGTGTGATGTTAATCAGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aagatgggtttcattctcaaataagagtgtcagctctgcttctggttttctgcagATTGTAAATTGGAGAACTCATTTAAAGTTTCCTGAAGAAGCAAGTCTATCTTCCGAAGCAAAAGATCTTATCAGTAAACTTTTGTGTAATGTAAGCCAGA
ttttctgc CT-rich tract
tcaaataa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gccacacatgcatccttatatttttctgcaatcttctcatcccaaaagatgggtttcattctcaaataagagtgtcagctctgcttctggttttctgcagATTGTAAATTGGAGAACTCATTTAAAGTTTCCTGAAGAAGCAAGTCTATCTTCCGAAGCAAAAGATCTTATCAGTAAACTTTTGTGTAATGTAAGCCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
-ccacaca
- - - - -gcatcct
- - - - - - - - - - - - -ctgcaat
- - - - - - - - - - - - - - - - - - tcatccc
- - - - - - - - - - - - - - - - - - - - - -aaaagat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgcttc