Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggttttcttgcatcctggaatgattatgtaactctcttttatatgttggtgatatctgatgatttaattagttatcttttaaaaattttgcagGTAAAAGGGGAATTGAACATATCTTACATCTGTTCTAGGTACTATCGAGCACCTGAACTTATATTTGGTGCAACTGAATACACCACAGCCATTGATATCT

Basic information

species Vitis vinifera
transcript Vv07s0005g02100.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g02100.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os05g04340.2 (Oryza sativa), 3'ss of exon 7
gttggttttcttgcatcctggaatgattatgtaactctcttttatatgttggtgatatctgatg-atttaattagttatcttttaaaaattttgcagGTAAAAGGGGAATTGAACATATCTTACATCTGTTCTAGGTACTATCGAGCACCTGAACTTATATTTGGTGCAACTGAATACACCACAGCCATTGATATCT
            | ||  |  | | ||||    |  |||      |  |||    | |||| || |  ||||   || |  | | |     ||  |||||||||| |||   || || |||||||||||||| ||||||||  |||| || || || ||||||||||| ||||||||||| ||||| |||||| | |
------------gtatgatc-actcattaccagatactcacacgaacattgccattgtctgttgtacctaatcttttgttctatta-----ttatagGTAAAAGGAGAACCAAATATTTCTTACATCTGTTCAAGGTACTACAGAGCTCCAGAGCTCATATTTGGTGCTACTGAATACACAACAGCGATTGATGTTT

upper sequence: Vv07s0005g02100.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G155836_T01 (Zea mays), 3'ss of exon 7
gttggttttcttgcatcctggaatgattatgtaactctcttttatatgt-tggtgatatctgatgatttaattagttatcttttaaaaattttgcagGTAAAAGGGGAATTGAACATATCTTACATCTGTTCTAGGTACTATCGAGCACCTGAACTTATATTTGGTGCAACTGAATACACCACAGCCATTGATATCT
               |   |  || |  | | ||||    || | | |  |  | ||   || ||  |   | | || | |||  |   ||||  |||||||||| |||   ||||| |||||||||||||||||||||||  |||| || || || ||||||||||| ||||||||||| |||||||||||| | |
--------------gtatggttataagcaagcaactgatattcacaggaatcttcatccttgttgcgtgcctaaattttgtttgtactgtttt--agGTAAAAGGCGAACCAAACATTTCTTACATCTGTTCTAGGTACTACAGAGCTCCAGAGCTCATATTTGGTGCTACTGAATACACAACAGCCATTGATGTTT

upper sequence: Vv07s0005g02100.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA10G01280.1 (Glycine max), 3'ss of exon 7
gttggttttcttgcatcctggaatgattatgtaactctcttttatatgttgg-tgatatctgatgatt-taattagtta-tcttttaaaaattttgcagGTAAAAGGGGAATTGAACATATCTTACATCTGTTCTAGGTACTATCGAGCACCTGAACTTATATTTGGTGCAACTGAATACACCACAGCCATTGATATCT
||  |||   |  || ||||||||   | | |  || | ||| |  |  |   |||  ||||||  || | || | | | | ||  |   ||||  ||||| |||||||||   ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
gtatgttcattctcaacctggaatttctgt-tgtctgtttttcactttctatctgaattctgattgttatcatgaataaattttgcacttatttgacagGTCAAAGGGGAACCAAACATATCTTACATCTGCTCTAGGTACTATAGAGCACCTGAACTTATATTTGGTGCAACTGAGTACACCACGGCCATTGATATTT

upper sequence: Vv07s0005g02100.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA02G01220.1 (Glycine max), 3'ss of exon 7
gttggttttcttgcatcctggaatgattatgtaactctcttttatatgttgg-tgatatctgatgattta--attagtta-tcttttaaaaattttgcagGTAAAAGGGGAATTGAACATATCTTACATCTGTTCTAGGTACTATCGAGCACCTGAACTTATATTTGGTGCAACTGAATACACCACAGCCATTGATATCT
||  ||||  |  || ||||| ||  |||| || || | ||| |  |  |   |||  |||||||  |||  || | | | | ||  |   ||||  ||||| ||||| |||   ||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||| |||||||||||||
gtatgtttattctcaacctggcatttttat-tatctgtttttaactttctatctgaattctgatgtgttaccatgaataaattttgcacttatttgacagGTCAAAGGCGAACCAAACATATCTTATATCTGTTCTAGGTACTATAGAGCACCTGAGCTTATATTTGGTGCAACTGAGTACACCACGGCCATTGATATCT

upper sequence: Vv07s0005g02100.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: EFJ07923 (Selaginella moellendorffii), 3'ss of exon 7
gttggttttcttgcatcctggaatgattatgta-actctcttttatatgttggtgatatctgatgatttaattagttatcttttaaaaattttgcagGTAAAAGGGGAATTGAACATATCTTACATCTGTTCTAGGTACTATCGAGCACCTGAACTTATATTTGGTGCAACTGAATACACCACAGCCATTGATATCT
                    |  || |||   | |   || ||   ||   |  | |   |   | ||      | | |  ||   |||     ||||| ||||| ||    |||||||| || ||||||||  | || || || || || ||||||||||||||||||||||| ||||| |||||||| || ||||
------------------gtgggtgcttacaaataggatccttggaattcagcagctgatttgcgttt---cctgcttttcttggcaaaacaaacagGTGAAAGGAGAGCCCAACATATCGTATATCTGTTCCCGTTATTACCGTGCTCCGGAACTTATATTTGGTGCAACTGACTACACAACAGCCATCGACATCT

upper sequence: Vv07s0005g02100.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: EFJ07216 (Selaginella moellendorffii), 3'ss of exon 7
gttggttttcttgcatcctggaatgattatgta-actctcttttatatgttggtgatatctgatgatttaattagttatcttttaaaaattttgcagGTAAAAGGGGAATTGAACATATCTTACATCTGTTCTAGGTACTATCGAGCACCTGAACTTATATTTGGTGCAACTGAATACACCACAGCCATTGATATCT
                    |  || |||   | |   || ||   ||   |  | |   |   | ||    |  || || |   ||||     ||||| || || ||    |||||||| || ||||||||  | ||||| || || || ||||||||||||||||||||||| ||||| |||||||| || ||||
------------------gtgggtgcttacaaataggatccttggaattcagcagctgatttgcgtttc--ctgcttttcctggcaaaac--aacagGTGAAGGGAGAGCCCAACATATCGTATATCTGTTCCCGTTACTACCGTGCTCCGGAACTTATATTTGGTGCAACTGACTACACAACAGCCATCGACATCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33405137|gb|CF210764.1|CF210764
EST:     CACATACCCACCAGCTAAAGCTATGTGATTTTGGAAGTGCAAAAGTTTTG                         GTAAAAGGGGAATTGAACATATCTTACATCTGTTCTAGGTACTATCGAGCA
genomic: CACATACCCACCAGCTAAAGCTATGTGATTTTGGAAGTGCAAAAGTTTTGgttggttttc ... aattttgcagGTAAAAGGGGAATTGAACATATCTTACATCTGTTCTAGGTACTATCGAGCA
EST: gi|30125127|gb|CB910466.1|CB910466
EST:     CACATACCCACCAGCTAAAGCTATGTGATTTTGGAAGTGCAAAAGTTTTG                         GTAAAAGGGGAATTGAACATATCTTACATCTGTTCT
genomic: CACATACCCACCAGCTAAAGCTATGTGATTTTGGAAGTGCAAAAGTTTTGgttggttttc ... aattttgcagGTAAAAGGGGAATTGAACATATCTTACATCTGTTCT
EST: gi|161712353|gb|FC061927.1|FC061927
EST:     CACATACCCACCAGCTAAAGCTATGTGATTTTGGAAGTGCAAAAGTTTTG                         GTAAAAGGGGAATTGAACATATCTTACATCTGTTCTAGGTACTATCGAGCA
genomic: CACATACCCACCAGCTAAAGCTATGTGATTTTGGAAGTGCAAAAGTTTTGgttggttttc ... aattttgcagGTAAAAGGGGAATTGAACATATCTTACATCTGTTCTAGGTACTATCGAGCA
EST: gi|110360806|gb|EC924193.1|EC924193
EST:     CACATACCCACCAGCTAAAGCTATGTGATTTTGGAAGTGCAAAAGTTTTG                         GTAAAAGGGGAATTGAACATATCTTACATCTGTTCTAGGTACTATCGAGCA
genomic: CACATACCCACCAGCTAAAGCTATGTGATTTTGGAAGTGCAAAAGTTTTGgttggttttc ... aattttgcagGTAAAAGGGGAATTGAACATATCTTACATCTGTTCTAGGTACTATCGAGCA
EST: gi|30133168|gb|CB918507.1|CB918507
EST:     CACATACCCACCAGCTAAAGCTATGTGATTTTGGAAGTGCAAAAGTTTTG                         GTAAAAGGGGAATTGAACATATCTTACATCTGTTCTAGGTACTATCGAGCA
genomic: CACATACCCACCAGCTAAAGCTATGTGATTTTGGAAGTGCAAAAGTTTTGgttggttttc ... aattttgcagGTAAAAGGGGAATTGAACATATCTTACATCTGTTCTAGGTACTATCGAGCA
EST: gi|110710881|gb|EE087442.1|EE087442
EST:     CACATACCCACCAGCTAAAGCTATGTGATTTTGGAAGTGCAAAAGTTTTG                         GTAAAAGGGGAATTGAACATATCTTACATCTGTTCTAGGTACTATCGAGCA
genomic: CACATACCCACCAGCTAAAGCTATGTGATTTTGGAAGTGCAAAAGTTTTGgttggttttc ... aattttgcagGTAAAAGGGGAATTGAACATATCTTACATCTGTTCTAGGTACTATCGAGCA
EST: gi|71875370|gb|DT024425.1|DT024425
EST:     CACATACCCACCAGCTAAAGCTATGTGATTTTGGAAGTGCAAAAGTTTTG                         GTAAAAGGGGAATTGAACATATCTTACATCTGTTCTAGGTACTATCGAGCA
genomic: CACATACCCACCAGCTAAAGCTATGTGATTTTGGAAGTGCAAAAGTTTTGgttggttttc ... aattttgcagGTAAAAGGGGAATTGAACATATCTTACATCTGTTCTAGGTACTATCGAGCA
EST: gi|110700287|gb|EE078155.1|EE078155
EST:     CACATACCCACCAGCTAAAGCTATGTGATTTTGGAAGTGCAAAAGTTTTG                         GTAAAAGGGGAATTGAACATATCTTACATCTGTTCTAGGTACTATCGAGCA
genomic: CACATACCCACCAGCTAAAGCTATGTGATTTTGGAAGTGCAAAAGTTTTGgttggttttc ... aattttgcagGTAAAAGGGGAATTGAACATATCTTACATCTGTTCTAGGTACTATCGAGCA
EST: gi|30252766|gb|CB970317.1|CB970317
EST:     CACATACCCACCAGCTAAAGCTATGTGATTTTGGAAGTGCAAAAGTTTTG                         GTAAAAGGGGAATTGAACATATCTTACATCTGTTCTAGGTACTATCGAGCA
genomic: CACATACCCACCAGCTAAAGCTATGTGATTTTGGAAGTGCAAAAGTTTTGgttggttttc ... aattttgcagGTAAAAGGGGAATTGAACATATCTTACATCTGTTCTAGGTACTATCGAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatatgttggtgatatctgatgatttaattagttatcttttaaaaattttgcagGTAAAAGGGGAATTGAACATATCTTACATCTGTTCTAGGTACTATCGAGCACCTGAACTTATATTTGGTGCAACTGAATACACCACAGCCATTGATATCT
                       atttaat  putative branch site (score: 4)
             atatctgatgatttaa  TA-rich tract