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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatcacatcaacaacatgtcccacagaactgaagtgatcacatgtcacacccctctcacacagtcgcactgtacttccccataactgattccattaaatttacattccccctttctaatttctcttaatgtgggacttgtagGTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGGTATGGTCCAAGGTACCCACAAAGGATACACCACAGGGGCTCATCACTGC

Basic information

species Vitis vinifera
transcript Vv07s0005g00740.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g00740.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA03G37420.1 (Glycine max), 3'ss of exon 7
gtatatcacatcaacaacatgtcccacagaactgaagtgatcacatgtcacacccctctcacacagtcgcactgtacttccccataactgattccattaaatttacattccccctttctaatttctcttaatgtgggacttgtagGTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGGTATGGTCCAAGGTACCCACAAAGGATACACCACAGGGGCTCATCACTGC
                                                                   |  |  ||  |     | |     ||  |  ||| ||  |||      |||| |||| |  | ||       ||  ||||||| ||| |  |||| |||||||||||||||||||| || |||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||
----------------------------------------------------------------gtacaaaaagttgtcaatgaaagtgttttataaaaaagttggatttta---ttctgatttattgttat------ttttcagGTGGATTACTTGCTGGGAGACAACCCCTTGAAGATGTCTTATATGGTGGGGTATGGTCCACGGTACCCGCAAAGGATACACCACAGGGGCTCATCGCTGC

upper sequence: Vv07s0005g00740.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA02G01990.1 (Glycine max), 3'ss of exon 7
gtatatcacatcaacaacatgtcccacagaactgaagtgatcacatgtcacacccctctcacacagtcgcactgtacttccccataactgattccattaaatttacattccccctttctaatttctcttaatgtgggacttgtagGTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGGTATGGTCCAAGGTACCCACAAAGGATACACCACAGGGGCTCATCACTGC
                                     | |  | || | |     || | | |  ||    || |  || || ||   ||  |  ||| || ||  |||     |||  |||     | ||  ||  | ||  ||||||| ||| |  | || |||||||| ||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||| || |
-------------------------------------tcaatatattttaa---tctattaaaatgtgttgct-tgatttcctattcttg--ttaattgaacttg-attttttttttaaaataaaaataaaaatgt-attttcagGTGGATTACTTGCTTGGAGACAACCCATTGAAGATGTCATACATGGTGGGGTATGGTCCACGGTACCCACGAAGGATACACCATAGGGGCTCATCTCTAC

upper sequence: Vv07s0005g00740.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA10G02130.1 (Glycine max), 3'ss of exon 7
gtatatcacatcaacaacatgtcccacagaactgaagtgatcacatgtcacacccctctcacacagtcgcactgtacttccccataactgattccattaaatttacattccccctttctaatttctcttaatgtgggacttgtagGTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGGTATGGTCCAAGGTACCCACAAAGGATACACCACAGGGGCTCATCACTGC
                         | | ||   | || |     || |||      |  | | |||     |  | ||||  ||   ||  |   || || ||   ||     ||| |||||| | | |         || |||||||| ||| |  | || |||||||| ||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||| ||||| ||||| || |
------------------------taaacaaagaatgtaaaagagtgccac------cagaaaaagtgttgttagatttcct-attcttg--ttagttgaacttgattttt---tttttaatttttgtaa---------ttttagGTGGATTACTTGCTTGGAGACAACCCGTTGAAGATGTCGTACATGGTGGGGTATGGTCCACGGTACCCACGAAGGATACACCATAGGGGATCATCTCTAC

upper sequence: Vv07s0005g00740.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA19G40030.1 (Glycine max), 3'ss of exon 10
gtatatcacatcaacaacatgtcccacagaactgaagtgatcacatgtcacacccctctcacacagtcgcactgtacttccccataactgattccattaaatttacattccccctttctaatttctcttaatgtgggacttgtagGTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGGTATGGTCCAAGGTACCCACAAAGGATACACCACAGGGGCTCATCACTGC
                                                                                  | ||  || |    | |  |  ||  | |||    | ||     |  ||   ||| ||  | | ||   | | | |  |      ||||    |||||    | |   |  || |   ||   | | |  | |||       ||                   
--------------------------------------------------------------------------------gtcttatatggtggggtaaggtccacgatacccg---caaagGATACACAACA-GGGGCTCATCGCTGCCGTCCGTTTCTGT---TCACCCTGGCAAGATCCAATGCTCAGCAGGATTCAGTGTGATGAAGTCGCAATCACCCAAC-------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77586578|gb|DV222413.1|DV222413
EST:     GTGGAACTATTATCACCCCAAAGAGGCTTCGAGTCATTGCTAAGAAACAG                         GTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
genomic: GTGGAACTATTATCACCCCAAAGAGGCTTCGAGTCATTGCTAAGAAACAGgtatatcaca ... ggacttgtagGTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
EST: gi|45771416|gb|CN007268.1|CN007268
EST:     CAAAGAGGCTTCGAGTCATTGCTAAGAAACAG                         GTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
genomic: CAAAGAGGCTTCGAGTCATTGCTAAGAAACAGgtatatcaca ... ggacttgtagGTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
EST: gi|110418921|gb|EC985104.1|EC985104
EST:     GTGGAACTATTATCACCCCAAAGAGGCTTCGAGTCATTGCTAAGAAACAG                         GTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
genomic: GTGGAACTATTATCACCCCAAAGAGGCTTCGAGTCATTGCTAAGAAACAGgtatatcaca ... ggacttgtagGTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
EST: gi|83275181|gb|DV939277.1|DV939277
EST:     G-GGAACTA-TATCACCCCAAAGAGGCTTCGAGTCA-TGCTAAGAAACAG                         GTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
genomic: GTGGAACTATTATCACCCCAAAGAGGCTTCGAGTCATTGCTAAGAAACAGgtatatcaca ... ggacttgtagGTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
EST: gi|156739183|gb|EV243304.1|EV243304
EST:     GTGGAACTATTATCACCCCAAAGAGGCTTCGAGTCATTGCTAAGAAACAG                         GTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
genomic: GTGGAACTATTATCACCCCAAAGAGGCTTCGAGTCATTGCTAAGAAACAGgtatatcaca ... ggacttgtagGTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
EST: gi|71875462|gb|DT024517.1|DT024517
EST:     GTGGAACTATTATCACCCCAAAGAGGCTTCGAGTCATTGCTAAGAAACAG                         GTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
genomic: GTGGAACTATTATCACCCCAAAGAGGCTTCGAGTCATTGCTAAGAAACAGgtatatcaca ... ggacttgtagGTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
EST: gi|110386518|gb|EC951118.1|EC951118
EST:     GCTTCGAGTCATTGCTAAGAAACAG                         GTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
genomic: GCTTCGAGTCATTGCTAAGAAACAGgtatatcaca ... ggacttgtagGTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
EST: gi|34320163|gb|CF372917.1|CF372917
EST:     GTGAAACTATTATCACCCCAAAGAGGCTTCGAGTCATTGCTAAGAAACAG                         GTGGACTACCTCTTGGGGGACAACCCCTNGAAGATGTCCTACATGGTGGGG
genomic: GTGGAACTATTATCACCCCAAAGAGGCTTCGAGTCATTGCTAAGAAACAGgtatatcaca ... ggacttgtagGTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
EST: gi|110687298|gb|EE064584.1|EE064584
EST:     GTGGAACTATTATCACCCCAAAGAGGCTTCGAGTCATTGCTAAGAAACAG                         GTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
genomic: GTGGAACTATTATCACCCCAAAGAGGCTTCGAGTCATTGCTAAGAAACAGgtatatcaca ... ggacttgtagGTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
EST: gi|71874084|gb|DT023139.1|DT023139
EST:     GTGGAACTATTATCACCCCAAAGAGGCTTCGAGTCATTGCTAAGAAACAG                         GTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
genomic: GTGGAACTATTATCACCCCAAAGAGGCTTCGAGTCATTGCTAAGAAACAGgtatatcaca ... ggacttgtagGTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
EST: gi|352785787|gb|FQ475790.1|FQ475790
EST:     GTGGAACTATTATCACCCCAAAGAGGCTTCGAGTCATTGCTAAGAAACAG                         GTGGACTACTTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
genomic: GTGGAACTATTATCACCCCAAAGAGGCTTCGAGTCATTGCTAAGAAACAGgtatatcaca ... ggacttgtagGTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
EST: gi|83274961|gb|DV939057.1|DV939057
EST:     GT-GAACTATTATCACCCCAAAGAGGCTTCGAGTCATTGCTAAGAAACAG                         GTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
genomic: GTGGAACTATTATCACCCCAAAGAGGCTTCGAGTCATTGCTAAGAAACAGgtatatcaca ... ggacttgtagGTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
EST: gi|110701944|gb|EE080092.1|EE080092
EST:     GAGGAACTATTATCACCCCAAAGATGCTTCGAGTCATTGCTAAGAAACAG                         GTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG
genomic: GTGGAACTATTATCACCCCAAAGAGGCTTCGAGTCATTGCTAAGAAACAGgtatatcaca ... ggacttgtagGTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attccattaaatttacattccccctttctaatttctcttaatgtgggacttgtagGTGGACTACCTCTTGGGGGACAACCCCTTGAAGATGTCCTACATGGTGGGGTATGGTCCAAGGTACCCACAAAGGATACACCACAGGGGCTCATCACTGC
     attaaatttacatt  TA-rich tract