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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccaccaccttttttttcatgctgcctgtgctttattttttaatcatttctttgattctatatctaacactccaatgagttctttatagGTTCTGAAATATACCAGGAAACTTTGACAAAGGCACTTGCTAAACATTTTACTGCCAGACTGCTTATTGTTGATTCTCTTCTATTGCCTGGT

Basic information

species Vitis vinifera
transcript Vv07s0005g00200.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g00200.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os11g43970.1 (Oryza sativa), 3'ss of exon 8
-----------------------------------------gtaccaccaccttttttttcatgctgcc-tgtgctttattttttaatcatttctttgattctatatctaacact-ccaatg-agttctttat-agGTTCTGAAATATACCAGGAAACTTTGACAAAGGCACTTGCTAAACATTTTACTGCCAGACTGCTTATTGTTGATTCTCTTCTATTGCCTGGT
                                          ||     |  |  ||     |   ||  ||||| |  ||||||  | |||  | |        |||| |   | | |||| |    |  || |||||| || || || |||||||| |||| |||||||||||| ||||||||   ||| || || ||| |||||||||| ||| | |||||||| 
gtaccttttatgatctcattgcatatttattgtcttcggagttaaattgaggtccttgaaggtaaggctgtgtgcatccttttttgctgattcttgtag----gcatctgatttttctaatgcaaacatgcatcagGTTCGGAGATTTATCAGGAAACATTGATAAAGGCACTTGCAAAACATTTCGGTGCTAGGCTACTTGTTGTTGATTCGCTTTTGTTGCCTGGG

upper sequence: Vv07s0005g00200.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA10G02410.1 (Glycine max), 3'ss of exon 4
gtaccaccaccttttttttcatgctgcctgtgctt-tattttttaatcatttctttgattctat-atctaacactccaatgagttctttatagGTTCTGAAATATACCAGGAAACTTTGACAAAGGCACTTGCTAAACATTTTACTGCCAGACTGCTTATTGTTGATTCTCTTCTATTGCCTGGT
|||   ||    ||   |   |  ||  | ||||| || |||    |  || |  |       | || |||   | || | | |  | | ||||||| |||||||||||||| |||||| | ||||||||||  || ||||||  ||||||||| || ||||| |||||||||  | ||||||||
gtagttccgtagttccatagtttttgtttatgcttctactttccccttcttgcggtagagaagtgatataattttaca-taattcttgtgtagGTTCAGAAATATACCAGGAGACTTTGTCCAAGGCACTTGTGAAGCATTTTGGTGCCAGACTACTAATTGTGGATTCTCTTTCACTGCCTGGT

upper sequence: Vv07s0005g00200.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA02G17410.1 (Glycine max), 3'ss of exon 3
gtaccaccaccttttttttcatgctgcctgtgctttattttttaatcatttctttgattctatatctaacactcca-atgagttctttatagGTTCTGAAATATACCAGGAAACTTTGACAAAGGCACTTGCTAAACATTTTACTGCCAGACTGCTTATTGTTGATTCTCTTCTATTGCCTGGT
            ||   |   |  ||| | |||||    ||||   |  || ||  | |  | |  | | | |  | |||| |  | | ||||||| |||||||| ||||| ||||||   ||||||||||| || ||||||  |||||| || || ||||| ||||||||   ||||||||||
--------gtagttacataattcttgcttatgcttccactttt---ccctttttgtaatagagaagtgatattttatatgattcttgtgtagGTTCGGAAATATATCAGGAGACTTTGTGCAAGGCACTTGCAAAGCATTTTGGTGCCAGGCTACTGATTGTCGATTCTCTCTCATTGCCTGGT

upper sequence: Vv07s0005g00200.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA10G02400.1 (Glycine max), 3'ss of exon 7
gtaccaccaccttttttttcatgctgcctgtgctttattttttaatcatttctttgattctatatctaacactcca-atgagttctttatagGTTCTGAAATATACCAGGAAACTTTGACAAAGGCACTTGCTAAACATTTTACTGCCAGACTGCTTATTGTTGATTCTCTTCTATTGCCTGGT
            ||   |   |   || | |||||    ||||   |  || ||  | |  | |  | | | |  | |||| | || | ||||||| |||||||| ||||| ||||||   ||||||||||| || ||||||  |||||| || || ||||| ||||||||   ||||||||| 
--------gtagttacataattctcgcttatgcttccactttt---ccctttttgtaatagagaagtgatattttatatgattcctgtgtagGTTCGGAAATATATCAGGAGACTTTGTGCAAGGCACTTGCGAAGCATTTTGGTGCCAGGCTACTGATTGTCGATTCTCTCTCATTGCCTGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttttaatcatttctttgattctatatctaacactccaatgagttctttatagGTTCTGAAATATACCAGGAAACTTTGACAAAGGCACTTGCTAAACATTTTACTGCCAGACTGCTTATTGTTGATTCTCTTCTATTGCCTGGT
                           atctaac  putative branch site (score: 2)
                                             ttctttat  putative PPT
     ttaatcatttcttt  TA-rich tract