Sequence
atgc intronic sequence ATGC exonic sequencegtaagatcatcctcaatgttcttgatcatcatataacaattcatattctttctgttgaaatgagtatcaaattccactgcagagctctctacttattccaactggttgacttgcttatagGTGCAAGAAGCTGCAGATTGCTTGGGGGCTGATTGTGTGCCTCGCTATGTTGAGATGAAGCAAATGCAGGACCTTGATCTTGAAAAAATACTTGGGCAAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0061g01340.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os11g05260.1 (Oryza sativa), 3'ss of exon 6
gtaagatcatcctcaatgttcttgatcatcatataacaattcatattctttctgttgaaatgagtatcaaattccactgcagagctctctacttattccaac--tggttgacttgcttatagGTGCAAGAAGCTGCAGATTGCTTGGGGGCTGATTGTGTGCCTCGCTATGTTGAGATGAAGCAAATGCAGGACCTTGATCTTGAAAAAATACTT-GGGCAAT
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---------gtaactacattctgaagtctga----acaatttgcaaagttta-gtccaatgcattatcg--ttttattgtta--ttacctgcttgatctaaccatagtagagtgaattgtagGTTCAAGAGGCTGCAGATTGCTTAGGTGCTGACTGTGTGCCTCGTTATGTGGAAATGAAGAAACTGCTAGAACTAGAAATTGATGATGCCTTCCAAACAA-
upper sequence: Vv06s0061g01340.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA11G19400.1 (Glycine max), 3'ss of exon 7
gtaagatcatcctcaatgttcttgatcatcatataacaattcatattcttt--ctgttgaaatgagtatcaaattccactgcagagctctctacttattccaactggttgacttgcttatagGTGCAAGAAGCTGCAGATTGCTTGGGGGCTGATTGTGTGCCTCGCTATGTTGAGATGAAGCAAATGCAGGACCTTGATCTTGAAAAAATACTTGGGCAAT
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-------------------tatatatatatacctgttgagttgtatgcctgaactggagaatttagattttctatttgttgttg---ttttcctctaattaaattgttagatatgaatttagGTACAAGAAGCTGCAGATTGCTTGGGTGCTGACTGTGTGCCTCGATATGTTGAGATGAAGCAGATGGGGAGCTTTGATGTTGAAACTATCTTCAAACAAA
upper sequence: Vv06s0061g01340.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA12G09100.1 (Glycine max), 3'ss of exon 7
gtaagatcatcctcaatgttcttgatcatcatataacaattcatattctttctgttgaaat--gagtatcaaattccactgcagagctctctact-tattccaactggttgacttgcttatagGTGCAAGAAGCTGCAGATTGCTTGGGGGCTGATTGTGTGCCTCGCTATGTTGAGATGAAGCAAATGCAGGACCTTGATCTTGAAAAAATACTTGGGCAAT
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-----------------------tatatacctgttgagttgtatgcctgaactggagaatttggattttctatttctattcattgttgttctcctctaattaaattgttagatatgaatttagGTACAAGAAGCTGCAGATTGCTTGGGTGCTGACTGTGTGCCTCGATATGTTGAGATGAAGCAGATGGGGAACTTTGATGTTGAAACTCTCTTCAAACAAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atcaaattccactgcagagctctctacttattccaactggttgacttgcttatagGTGCAAGAAGCTGCAGATTGCTTGGGGGCTGATTGTGTGCCTCGCTATGTTGAGATGAAGCAAATGCAGGACCTTGATCTTGAAAAAATACTTGGGCAAT
ggttgac putative branch site (score: 4)
cttgctt CT-rich tract
tacttatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagatcatcctcaatgttcttgatcatcatataacaattcatattctttctgttgaaatgagtatcaaattccactgcagagctctctacttattccaactggttgacttgcttatagGTGCAAGAAGCTGCAGATTGCTTGGGGGCTGATTGTGTGCCTCGCTATGTTGAGATGAAGCAAATGCAGGACCTTGATCTTGAAAAAATACTTGGGCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA