Sequence
atgc intronic sequence ATGC exonic sequence...tcccatttgttcttatcaaatagatagtcaaggaaaaaaaaatcccttcctgattgtttctttttccatttttctttctttctttctttttttaccttagGTGGGCTCCTATCATGCATCATCGTTACTGGTGGCATCCAGGCCTCCAACCCCAGGTGTTCTTAGTCGTGGCATTGGTCTTGAAGGTATTTCTAGTGTCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0061g01310.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA17G05280.1 (Glycine max), 3'ss of exon 7
tcccatttgttcttatcaaatagatagtcaaggaaaaaaaaatcccttcctgattgtttctttttccatttttctttctttctttctttttttacctt---agGTGGGCTCCTATCATGCATCATCGTTACTGGTGGCATCCAGGCCTCCAACCCCAGGTGTTCTTAGTCGTGGCATTGGTCTTGAAGGTATTTCTAGTGTCT
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--taatatatcaaaattgaaatcatattttcatgatttttt-ttctttacacaggattatataatcagtgttgttgatattcattttgttttaaactttgtagGTTGGTTCGTATCATGCATCTTCATTATTGGTAGCATCCAGACCTCCAACTCCCGGAGTTCTTAGTCGAGGAATTGGTTTGGAAGGTCTTTCTAGTGTCT
upper sequence: Vv06s0061g01310.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA12G30670.1 (Glycine max), 3'ss of exon 7
tcccatttgttcttatcaaatagatagtcaaggaaaaaaaaatcccttcctgattgtttctttttccatttttctttctttctttctttttt-taccttagGTGGGCTCCTATCATGCATCATCGTTACTGGTGGCATCCAGGCCTCCAACCCCAGGTGTTCTTAGTCGTGGCATTGGTCTTGAAGGTATTTCTAGTGTCT
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tcaaaattgaaatcat-attttcatgattatgttttctatatgcagaattatataatcactttatgtgttgttgatattcattttgttttaaattttgtagGTTGGTTCGTATCATGCTTCTTCATTATTGGTAGCATCCAGACCTCCAACTCCTGGAGTTCTTAGTCGAGGAATTGGTTTGGAAGGTCTTTCTAGTGTCT
upper sequence: Vv06s0061g01310.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA12G09060.1 (Glycine max), 3'ss of exon 7
tcccatttgttct-tatcaaatagatagtcaaggaaaaaaaaatcccttcctgattgtt-tctttttccatttttctttctttctttctttttttaccttagGTGGGCTCCTATCATGCATCATCGTTACTGGTGGCATCCAGGCCTCCAACCCCAGGTGTTCTTAGTCGTGGCATTGGTCTTGAAGGTATTTCTAGTGTCT
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-tcaattaaaacaatgttacttgtatttttctcaatatgcaggattgtaactaatcgctgtactgtgtcattgatattcatttactttaatcttt-ttgtagGTTGGCTCATACCATGCATCTTCATTACTGGTAGCATCCAGACCGCCAACTCCCGGAGTTCTTAGTCGAGGAATTGGTTTGGAAGGTCTTGCTAGTGTCT
upper sequence: Vv06s0061g01310.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA11G19420.1 (Glycine max), 3'ss of exon 7
tcccatttgttcttatcaaatagatagtcaaggaaaaaaaaatcccttcctgattgtt-tctttttccatttttctttctttctttctttttttaccttagGTGGGCTCCTATCATGCATCATCGTTACTGGTGGCATCCAGGCCTCCAACCCCAGGTGTTCTTAGTCGTGGCATTGGTCTTGAAGGTATTTCTAGTGTCT
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tcaattataataatgttacttgtatttttctcaacttgcaggattgtaactaatcactgtactgtgtcatagatattcatttactttaatcttt-ttatagGTTGGCTCATACCATGCATCTTCATTATTGGTAGCATCCAGACCGCCAACTCCTGGAGTTCTTAGTCGAGGAATTGGTTTGGAAGGTCTTTCCAGTGTCTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37187747|gb|CF607100.1|CF607100EST: AAATGGCCATTGTCATGTGTGTGGTTTCTGTAATCTCATCAGTGGACTCA GTGGGCTCCTATCATGCATCATCGTTACTGGTGGCATCCAGGCCTCCAACC
genomic: AAATGGCCATTGTCATGTGTGTGGTTTCTGTAATCTCATCAGTGGACTCAgtaagtttgc ... tttaccttagGTGGGCTCCTATCATGCATCATCGTTACTGGTGGCATCCAGGCCTCCAACC
EST:
gi|110731292|gb|EE105586.1|EE105586EST: AAATGGCCATTGTCATGTGTGTGGTTTCTGTAATCTCATCAGTGGACTCA GTGGGCTCCTATCATGCATCATCGTTACTGGTGGCATCCAGGCCTCCAACC
genomic: AAATGGCCATTGTCATGTGTGTGGTTTCTGTAATCTCATCAGTGGACTCAgtaagtttgc ... tttaccttagGTGGGCTCCTATCATGCATCATCGTTACTGGTGGCATCCAGGCCTCCAACC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttcctgattgtttctttttccatttttctttctttctttctttttttaccttagGTGGGCTCCTATCATGCATCATCGTTACTGGTGGCATCCAGGCCTCCAACCCCAGGTGTTCTTAGTCGTGGCATTGGTCTTGAAGGTATTTCTAGTGTCT
tcctgat putative branch site (score: 3)
ttgtttctttttccat CT-rich tract
atttttctttctttct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcccatttgttcttatcaaatagatagtcaaggaaaaaaaaatcccttcctgattgtttctttttccatttttctttctttctttctttttttaccttagGTGGGCTCCTATCATGCATCATCGTTACTGGTGGCATCCAGGCCTCCAACCCCAGGTGTTCTTAGTCGTGGCATTGGTCTTGAAGGTATTTCTAGTGTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
-cccattt
- - - - - - - - -aaataga
- - - - - - - - - - - - - - caaggaa
- - - - - - - - - - - - - - - - -aaaaaaa