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gtccacttctcctctctccaccatcttatgtgatttatttggtatcgaaaagctccataacatatatgttgttcctaagctcaatttcttaaatttgcagGTCAATTCACCTACTGTTCTACTGGATTCTTTTTGAGAATGTGATGTCTTTCCACCGGACCAAGGCCACTCTTATCGGTCTGCTAGAAGCAGGGAGAGCT
species | Vitis vinifera |
transcript | Vv06s0061g01230.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTTTATATCCCCTCCATCATCACCACATTGAATGCAGTTGGAACTCCAAG GTCAATTCACCTACTGTTCTACTGGATTCTTTTTGAGAATGTGATGTCTTTEST: gi|110719707|gb|EE095069.1|EE095069
genomic: GTTTATATCCCCTCCATCATCACCACATTGAATGCAGTTGGAACTCCAAGgtccacttct ... aaatttgcagGTCAATTCACCTACTGTTCTACTGGATTCTTTTTGAGAATGTGATGTCTTT
EST: GTTTATATCCCCTCCATCATCACCACATTGAATGCAGTTGGAACTCCAAG GTCAATTCACCTACTGTTCTACTGGATTCTTTTTGAGAATGTGATGTCTTTEST: gi|34543478|gb|CF511710.1|CF511710
genomic: GTTTATATCCCCTCCATCATCACCACATTGAATGCAGTTGGAACTCCAAGgtccacttct ... aaatttgcagGTCAATTCACCTACTGTTCTACTGGATTCTTTTTGAGAATGTGATGTCTTT
EST: GTTTATATCCCCTCCATCATCACCACATTGAATGCAGTTGGAACTCCAAG GTCAATTCACCTACTGTTCTACTGGATTCTTTTTGAGAATGTGATGTCTTTEST: gi|34543136|gb|CF511368.1|CF511368
genomic: GTTTATATCCCCTCCATCATCACCACATTGAATGCAGTTGGAACTCCAAGgtccacttct ... aaatttgcagGTCAATTCACCTACTGTTCTACTGGATTCTTTTTGAGAATGTGATGTCTTT
EST: GTTTATATCCCCTCCATCATCACCACATTGAATGCAGTTGGAACTCCAAG GTCAATTCACCTACTGTTCTACTGGATTCTTTTTGAGAATGTGATGTCTTTEST: gi|110428836|gb|EC995318.1|EC995318
genomic: GTTTATATCCCCTCCATCATCACCACATTGAATGCAGTTGGAACTCCAAGgtccacttct ... aaatttgcagGTCAATTCACCTACTGTTCTACTGGATTCTTTTTGAGAATGTGATGTCTTT
EST: GTTTATATCCCCTCCATCATCACCACATTGAATGCAGTTGGAACTCCAAG GTCAATTCACCTACTGTTCTACTGGATTCTTTTTGAGAATGTGATGTCTTTEST: gi|34543219|gb|CF511451.1|CF511451
genomic: GTTTATATCCCCTCCATCATCACCACATTGAATGCAGTTGGAACTCCAAGgtccacttct ... aaatttgcagGTCAATTCACCTACTGTTCTACTGGATTCTTTTTGAGAATGTGATGTCTTT
EST: GTTTATATCCCCTCCATCATCACCACATTGAATGCAGTTGGAACTCCAAG GTCAATTCACCTACTGTTCTACTGGATTCTTTTTGAGAATGTGATGTCTTT
genomic: GTTTATATCCCCTCCATCATCACCACATTGAATGCAGTTGGAACTCCAAGgtccacttct ... aaatttgcagGTCAATTCACCTACTGTTCTACTGGATTCTTTTTGAGAATGTGATGTCTTT
cgaaaagctccataacatatatgttgttcctaagctcaatttcttaaatttgcagGTCAATTCACCTACTGTTCTACTGGATTCTTTTTGAGAATGTGATGTCTTTCCACCGGACCAAGGCCACTCTTATCGGTCTGCTAGAAGCAGGGAGAGCT
ccataac putative branch site (score: 3)
tttctta putative PPT
tcaatttcttaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccacttctcctctctccaccatcttatgtgatttatttggtatcgaaaagctccataacatatatgttgttcctaagctcaatttcttaaatttgcagGTCAATTCACCTACTGTTCTACTGGATTCTTTTTGAGAATGTGATGTCTTTCCACCGGACCAAGGCCACTCTTATCGGTCTGCTAGAAGCAGGGAGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT