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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgttatatatatctttgatatccatcagttgttatcaaaaaaccgctttacagtattttgacttgactacatttgaagATTCTGGCAGATGCAATGGGGCTTGGGAAGACAATTATGACCATAGCTCTCCTTCTTGCTCATTCAGAAAAAGGTCTACTAGCCAGTAGTCAATCTACAA

Basic information

species Vitis vinifera
transcript Vv06s0061g01190.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0061g01190.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os02g32570.1 (Oryza sativa), 3'ss of exon 7
---------gtatgtgttatatatatctttgatatccatcagttgttatcaaaaaaccgcttta-------cagtattttgacttgac--tacatttgaagATTCTGGCAGATGCAATGGGGCTTGGGAAGACAATTATGACCATAGCTCTCCTTCTTGCTCATTCAGAAAAAGGTCTACTAGCCAGTAGTCAATCTACAA
          | |   |  |||| ||| ||  | ||  ||  |  |||| ||      | ||||       || | | || |||  ||  || |||  ||||||||||||||||||||||| || |||||||| |||||||| |||||||| ||||||||  | ||    |||||     |  | | |   || |||||  
gtaaggatcttctcaatattatacatccttcctttctttcgataattat-aatttctggttttagcatatccattttattaactgaacaataaattataagATTCTGGCAGATGCAATGGGACTGGGGAAGACTATTATGACAATAGCTCTTCTTCTTGCCGACTCTAGCAAAGGATGCATCACTACTCAGCATTCTACTC

upper sequence: Vv06s0061g01190.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G015190_T01 (Zea mays), 3'ss of exon 7
--------------------------gtatgtgttatatatatctttgatatccatcagttgttatcaaaaaaccgctttacagtattttgacttgactacatttgaagATTCTGGCAGATGCAATGGGGCTTGGGAAGACAATTATGACCATAGCTCTCCTTCTTGCTCATTCAGAAAAAGGTCTACTAGCCAGTAGTCAATCTACAA
                           | | ||||    || ||| ||||| | |||  || |  |  |     || |  |   ||||   ||| || || |  | ||||||||||||||||||||||| || |||||||| |||||||| |||||||| |||||| || ||||    |||||     |  | | |    |  || |  
gtaagaatatttttaatattgtatttctttatgtttagcatttctatgatagctatcgtttctggttgattttacgatcaattctatt--aactggagtaaaaattaagATTCTGGCAGATGCAATGGGACTGGGGAAGACTATTATGACGATAGCTCTTCTTCTTTCTGATTCTAGCAAAGGATGCATCACAACTCAGAATGCTGCTC

upper sequence: Vv06s0061g01190.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA17G05390.1 (Glycine max), 3'ss of exon 7
gtatgtgttata------tatatctttgatatccatcagttgttatcaaaaaaccgc--tttacagtattttgacttgac-tacatttgaagATTCTGGCAGATGCAATGGGGCTTGGGAAGACAATTATGACCATAGCTCTCCTTCTTGCTCATTCAGAAAAAGGTCTACTAGCCAGTAGTCAATCTACAA
|||||| |  ||      || | ||   | ||      | | | ||  |     |    |||  | | | ||   ||    |  ||||||||||| |||||||||| ||||||||||| ||||| || ||||||||| | || ||  |||| ||||||| ||| |||  |  |    | |||||| | | ||
gtatgtttcttaaggagttaaacctggaaaattttcttgctttcatgtattgttcaacatttgtaatgtattattttattgtgaatttgaagATTTTGGCAGATGCTATGGGGCTTGGAAAGACCATCATGACCATATCCCTTCTCGTTGCCCATTCAGGAAAGGGTGGATCAATAGGCAGTCAACCCATAA

upper sequence: Vv06s0061g01190.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA12G30540.1 (Glycine max), 3'ss of exon 8
--------------gtatgtgttatatatatctttgatatccatcagttgttatcaaaaaaccgctttacagtattttgacttgactacatttgaagATTCTGGCAGATGCAATGGGGCTTGGGAAGACAATTATGACCATAGCTCTCCTTCTTGCTCATTCAGAAAAAGGTCTACTAGCCAGTAGTCAATCTACAA
              |  |      |  | |  |||  |     |||  |  | |  || |   |   | || ||||||    |||    ||||||||||| |||||||||| ||||||||||| ||||| || ||||||||| | || ||  |||| ||||||| ||| |||  |  |      |||||| | | ||
gtatgtttcttaaggagttaaccctggaaaattttcttgctt-tcacatactgttcaacatttgtaatgcattattttattgtga----atttgaagATTTTGGCAGATGCTATGGGGCTTGGAAAGACCATCATGACCATATCCCTTCTCGTTGCCCATTCAGGAAAGGGTGGATCAATAGCCAGTCAACCCATAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcagttgttatcaaaaaaccgctttacagtattttgacttgactacatttgaagATTCTGGCAGATGCAATGGGGCTTGGGAAGACAATTATGACCATAGCTCTCCTTCTTGCTCATTCAGAAAAAGGTCTACTAGCCAGTAGTCAATCTACAA
     ttgttatcaaaaaa  TA-rich tract