1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tttaggtggtataacatgtacttcctttttatctggtcaaattgtgaagtaccgtgtttcctattaattttaactagtcaagataaatttatcattacagGGTGATGCTGCAGTGTGGTGCATTGGCTTTCAAAAAATTCAAGGTCAAGGAATAACAATTTTAGGAG
species | Vitis vinifera |
transcript | Vv06s0061g01030.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TATCTATGAATCTAAAACCTGAGGACTACCTTCTACAGCAGAATTCCATT GGTGATGCTGCAGTGTGGTGCATTGGCTTTCAAAAAATTCAAGGTCAAGGAEST: gi|351043367|gb|FQ451419.1|FQ451419
genomic: TATCTATGAATCTAAAACCTGAGGACTACCTTCTACAGCAGAATTCCATTgtgagatgtt ... atcattacagGGTGATGCTGCAGTGTGGTGCATTGGCTTTCAAAAAATTCAAGGTCAAGGA
EST: TATCTATGAATCTAAAACCTGAGGACTACCTTCTACAGCAGAATTCCATT GGTGATGCTGCAGTGTGGTGCATTGGCTTTCAAAAAATTCAAGGTCAAGGAEST: gi|352789949|gb|FQ479559.1|FQ479559
genomic: TATCTATGAATCTAAAACCTGAGGACTACCTTCTACAGCAGAATTCCATTgtgagatgtt ... atcattacagGGTGATGCTGCAGTGTGGTGCATTGGCTTTCAAAAAATTCAAGGTCAAGGA
EST: TATCTATGAATCTAAAACCTGAGGACTACCTTCTACAGCAGAATTCCATT GGTGATGCTGCAGTGTGGTGCATTGGCTTTCAAAAAATTCAAGGTCAAGGAEST: gi|349811312|gb|FQ407538.1|FQ407538
genomic: TATCTATGAATCTAAAACCTGAGGACTACCTTCTACAGCAGAATTCCATTgtgagatgtt ... atcattacagGGTGATGCTGCAGTGTGGTGCATTGGCTTTCAAAAAATTCAAGGTCAAGGA
EST: TATCTATGAATCTAAAACCTGAGGACTACCTTCTACAGCAGAATTCCATT GGTGATGCTGCAGTGTGGTGCATTGGCTTTCCAAAAATTCAAGGTCAAGGAEST: gi|110732513|gb|EE107864.1|EE107864
genomic: TATCTATGAATCTAAAACCTGAGGACTACCTTCTACAGCAGAATTCCATTgtgagatgtt ... atcattacagGGTGATGCTGCAGTGTGGTGCATTGGCTTTCAAAAAATTCAAGGTCAAGGA
EST: ACTACCTTCTACAGCAGAATTCCATT GGTGATGCTGCAGTGTGGTGCATTGGCTTTCAAAAAATTCAAGGTCAAGGAEST: gi|351057266|gb|FQ450973.1|FQ450973
genomic: ACTACCTTCTACAGCAGAATTCCATTgtgagatgtt ... atcattacagGGTGATGCTGCAGTGTGGTGCATTGGCTTTCAAAAAATTCAAGGTCAAGGA
EST: TATCTATGAATCTAAAACCTGAGGACTACCTTCTACAGCAGAATTCCATT GGTGATGCTGCAGTGTGGTGCATTGGCTTTCAAAAAATTCAAGGTCAAGGA
genomic: TATCTATGAATCTAAAACCTGAGGACTACCTTCTACAGCAGAATTCCATTgtgagatgtt ... atcattacagGGTGATGCTGCAGTGTGGTGCATTGGCTTTCAAAAAATTCAAGGTCAAGGA
gaagtaccgtgtttcctattaattttaactagtcaagataaatttatcattacagGGTGATGCTGCAGTGTGGTGCATTGGCTTTCAAAAAATTCAAGGTCAAGGAATAACAATTTTAGGAG
ttttaac putative branch site (score: 2)
tattaattttaactag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttaggtggtataacatgtacttcctttttatctggtcaaattgtgaagtaccgtgtttcctattaattttaactagtcaagataaatttatcattacagGGTGATGCTGCAGTGTGGTGCATTGGCTTTCAAAAAATTCAAGGTCAAGGAATAACAATTTTAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - catgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagataa