1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ccaaagaaacaaatggaaagccactgaagcattgcattcatacttttgctttaacacaagtatggattagatgacattttaatgatttaaatattttcagGATGGCCGGATCAACTACGATGAGTTCGTGACAATGATGAGAAAAGGGAACCCAGAACCGAACCCAAAGAAGAGACGGGATGTATTTGTTTGA
species | Vitis vinifera |
transcript | Vv06s0009g03150.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
ttgctttaacacaagtatggattagatgacattttaatgatttaaatattttcagGATGGCCGGATCAACTACGATGAGTTCGTGACAATGATGAGAAAAGGGAACCCAGAACCGAACCCAAAGAAGAGACGGGATGTATTTGTTTGA
ttttaat putative branch site (score: 3)
tattttc putative PPT
attagatgacatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccaaagaaacaaatggaaagccactgaagcattgcattcatacttttgctttaacacaagtatggattagatgacattttaatgatttaaatattttcagGATGGCCGGATCAACTACGATGAGTTCGTGACAATGATGAGAAAAGGGAACCCAGAACCGAACCCAAAGAAGAGACGGGATGTATTTGTTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- aaagaaa
- - - - - - - - aaagcca
- - - - - - - - - - - - tgaagca
- - - - - - - - - - - - - - - - -gcattca
- - - - - - - - - - - - - - - - - - - - - - - - - - -acacaag