1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aagtagaatttcaaacaccatatatgtaaccaagaaatgtaattgcagatatattaggcctttcttcatttcattgtcctttggattttttggtccacagATGGGGATTAGCACCATAGATTCCTCTGTTGCTGGTCTTGGAGGATGCCCATATGCCAAGGGAGCTTCAGGGAACGTGGCCACCGAGGATGTTGTTTACA
species | Vitis vinifera |
transcript | Vv06s0009g02640.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCCATGACACTTATGGGCAGTCTCTTCCAAATATTTTACTATCGCTCCAG ATGGGGATTAGCACCATAGATTCCTCTGTTGCTGGTCTTGGAGGATGCCCAEST: gi|110728088|gb|EE103349.1|EE103349
genomic: TCCATGACACTTATGGGCAGTCTCTTCCAAATATTTTACTATCGCTCCAGgtatgcaaac ... tggtccacagATGGGGATTAGCACCATAGATTCCTCTGTTGCTGGTCTTGGAGGATGCCCA
EST: TCCATGACACTTATGGGCAGTCTCTTCCAAATATTTTACTATCGCTCCAG ATGGGGATTAGCACCATAGATTCCTCTGTTGCTGGTCTTGGAGGATGCCCAEST: gi|22013907|gb|BQ798941.1|BQ798941
genomic: TCCATGACACTTATGGGCAGTCTCTTCCAAATATTTTACTATCGCTCCAGgtatgcaaac ... tggtccacagATGGGGATTAGCACCATAGATTCCTCTGTTGCTGGTCTTGGAGGATGCCCA
EST: TCCATGACACTTATGGGCAGTCTCTTCCAAATATTTTACTATCGCTCCAG --GGG-ATTAGCACCATAGATTCCTCTGTTGCTGGTCTTGGAGGATGCCCA
genomic: TCCATGACACTTATGGGCAGTCTCTTCCAAATATTTTACTATCGCTCCAGgtatgcaaac ... tggtccacagATGGGGATTAGCACCATAGATTCCTCTGTTGCTGGTCTTGGAGGATGCCCA
cagatatattaggcctttcttcatttcattgtcctttggattttttggtccacagATGGGGATTAGCACCATAGATTCCTCTGTTGCTGGTCTTGGAGGATGCCCATATGCCAAGGGAGCTTCAGGGAACGTGGCCACCGAGGATGTTGTTTACA
tttttt CT-rich tract
atttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtagaatttcaaacaccatatatgtaaccaagaaatgtaattgcagatatattaggcctttcttcatttcattgtcctttggattttttggtccacagATGGGGATTAGCACCATAGATTCCTCTGTTGCTGGTCTTGGAGGATGCCCATATGCCAAGGGAGCTTCAGGGAACGTGGCCACCGAGGATGTTGTTTACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
aagtagaa
- - - - - - aaacacc
- - - - - - - - - - - - - taaccaa
- - - - - - - - - - - - - - - - - aaatgtaa
- - - - - - - - - - - - - - - - - - - - - -tgcagat