Sequence
atgc intronic sequence ATGC exonic sequencegtatttatccttttgcctccaaacatcatgagaagtaacacttaacttcatattactattatcaattattagcttttatgatcatcaatacagGAAACTCAAGGAGTATGTGTTGCTGCTTATAAGACTAATGAATTTCCAGCATTTTTCACAGAAAAAAGTGGCAGCAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0009g02380.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os08g39420.1 (Oryza sativa), 3'ss of exon 6
------gtatttatccttttgcctccaaacatcatgagaagtaacacttaacttcatattact--attatcaattat-tagcttttatgatcatcaatacagGAAACTCAAGGAGTATGTGTTGCTGCTTATAAGACTAATGAATTTCCAGCATTTTTCACAGAAAAAAGTGGCAGCAAG
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tgtgctatatttgaaatttggtgt--atttctggctaggcatttcaatgaatgcaatgttgtttggtgctcaatcgtataggttaactgattgcattggcagGAAACTCAAGGAGTAACGGTTGCTGCTTACAAAACCAATGAATTTCCTGCTTTCTTTACAGAAGTCAGCGGATGTAAG
upper sequence: Vv06s0009g02380.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA09G00500.1 (Glycine max), 3'ss of exon 7
gtatttatccttttgcctccaaacatcatgagaagtaacacttaacttcatattactattatcaattattagcttttatgatcatcaatacagGAAACTCAAGGAGTATGTGTTGCTGCTTATAAGACTAATGAATTTCCAGCATTTTTCACAGAAAAAAGTGGCAGCAAG
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gtacccatttacttttgtgtcaatattact-gaagcagtcatc-------tattatagctttttattatttgtttttatcttga-----atagGAAACACTAGGAGTTTGTGTAGCTGCTTACAAGACTAATGAGTTTCCTGCATTTTTCACGGAATCAAGTGGCTGCAAG
upper sequence: Vv06s0009g02380.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT1G50510.1 (Arabidopsis thaliana), 3'ss of exon 8
gtatttatccttttgcctccaaacatcatgagaagtaacacttaacttcatattactattatcaattattagcttttatgatcatcaatacagGAAACTCAAGGAGTATGTGTTGCTGCTTATAAGACTAATGAATTTCCAGCATTTTTCACAGAAAAAAGTGGCAGCAAG
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gtatatagtctgttgccgaggcatatt-taatagtcaacaatcaagagttta--agttttcacaacagcta--tttgttga----caatgcagGAAACTCAAGAAGTGTATGTTGCTGCATACAAGAGCGATGAGTTTCCAGCATTTTTCACAGAAAAAAGTGGCTGTAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cacttaacttcatattactattatcaattattagcttttatgatcatcaatacagGAAACTCAAGGAGTATGTGTTGCTGCTTATAAGACTAATGAATTTCCAGCATTTTTCACAGAAAAAAGTGGCAGCAAG
acttaac putative branch site (score: 3)
atattactattatcaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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gtatttatccttttgcctccaaacatcatgagaagtaacacttaacttcatattactattatcaattattagcttttatgatcatcaatacagGAAACTCAAGGAGTATGTGTTGCTGCTTATAAGACTAATGAATTTCCAGCATTTTTCACAGAAAAAAGTGGCAGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG