Sequence
atgc intronic sequence ATGC exonic sequence...acaaaagaactatacaatttgatccctcgatcagccaagaattgctattgttttgctttctgtggtgttttgtggtgacactttttcccttttgttccagTGCCTTCCATTTAAGTTACAACATGCTTCTGAATCAAATGCGATCTGAGGATGGTGATCCTGAAAAGTTGCTTCGCAATTCATTCTATCAATTTCAAGCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0009g01750.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os12g18140.1 (Oryza sativa), 3'ss of exon 7
--acaaaagaactatacaatttgatccctcgatcagccaagaattgctattgttttgctttctgtggtgttttgtggtgacactttttcccttttgttccagTGCCTTCCATTTAAGTTACAACATGCTTCTGAATCAAATGCGATCTGAGGATGGTGATCCTGAAAAGTTGCTTCGCAATTCATTCTATCAATTTCAAGCA
|| ||| || | || | ||| || | |||||||| | | | || | || | | | ||| ||| || |||||||| ||||| || ||||| ||| | | |||||||| || | ||| |||||||||||||||||| | ||||| | ||||| || |||||||||||
ttgttgaactgttatgtttcttatagttttgagcgttcaattttttttcctgttttgcatggt-tctcaacttctcatgtgattatcctcctcttgatc-agTGCCTTTCATTTGAGCTACAATATGTTGTTAAATCAAATACGCTGTGAAGATGGTGATCCTGAAAAGCTTCTTCGGCACTCATTTTACCAATTTCAAGCT
upper sequence: Vv06s0009g01750.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GRMZM2G040995_T02 (Zea mays), 3'ss of exon 7
acaaaagaactatacaatttgatccctcgatca--gccaagaattgctattgttttgctttctgtggtgttttgtggtgacactttttcccttttgtt--ccagTGCCTTCCATTTAAGTTACAACATGCTTCTGAATCAAATGCGATCTGAGGATGGTGATCCTGAAAAGTTGCTTCGCAATTCATTCTATCAATTTCAAGCA
| | | | | ||| || | | | | | | | | | || |||| | || || | | | || | | || || | || |||||||| ||| | || ||||| ||||| | ||||||||||||||||||||||| ||||| |||||| | || || ||||||| ||||||||||| ||
--cagactgccct-ctgtttcattctatgtttattatcgcttttaagtgtggaattatgttctcttctgcttgg-gcttacccaactacctttctatttgttagTGCCTTTCATCTGAGCTACAATATGCTGTTAAATCAAATGCGATCTGAGGATGGGGATCCAGAAAAGCTCCTCCGGCATTCATTTTATCAATTTCAGGCT
upper sequence: Vv06s0009g01750.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA08G47700.1 (Glycine max), 3'ss of exon 7
---acaaaagaactatacaatttgatccctcgatcagccaagaattgctattgttttgctttctgtggtgttttgtggtgacactttttcccttttgttccagTGCCTTCCATTTAAGTTACAACATGCTTCTGAATCAAATGCGATCTGAGGATGGTGATCCTGAAAAGTTGCTTCGCAATTCATTCTATCAATTTCAAGCA
||||||| || || | | | | | | || || | || | ||| | | | | | | ||||| | || ||||||||| |||||||| ||||||||| || |||| |||||||| | ||| ||||||||||||||||| ||||| || ||||| || | ||| || ||||||
ccactaaaagaa--atgttatctattttcatattgtagcttgcataaataaattgtta-tctctattacataatttttaaattttccttcccctgcatttcagTGCCTTTCATTTAAGCTACAACATGATTTTGAACCAAATGCGGTGTGAAGATGGTGATCCTGAAAATTTGCTACGTAATTCCTTTTTTCAGTTCCAAGCA
upper sequence: Vv06s0009g01750.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT1G59760.1 (Arabidopsis thaliana), 3'ss of exon 7
---------------------acaaaagaactata--caatttgatccctcgatcagccaagaattgctattgttttgctttctgtggtgttttgtggtgacactttttcccttttgttccagTGCCTTCCATTTAAGTTACAACATGCTTCTGAATCAAATGCGATCTGAGGATGGTGATCCTGAAAAGTTGCTTCGCAATTCATTCTATCAATTTCAAGCA
| | ||| ||| |||| | | | | | || ||| | | | | ||||| || | |||||||||||||||| || || ||||||||||| |||||| |||| | ||| || ||||||||||| || | || || ||||| |||| ||| ||||||||
gtacattgttaagtatttctgatatttattttattatcaacctgattgatagtctgctttaagagggttagagttcttgacatattcactcaccaagactgttttgtttcctttattcaccagTGCCTTCCATTTGAGCTATAACATGCTTCTAAATCAATTGCGGTGTGAAGAAGGTGATCCTGAGAATCTTCTGCGAAATTCGTTCTTTCAGTTTCAAGCT
upper sequence: Vv06s0009g01750.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: PP1S69_14V6.1 (Physcomitrella patens), 3'ss of exon 7
------------------------------------------------------------------------------acaaaagaactatacaatttgatccctcgatcagccaagaattgctatt-gttttgctttctgtggtgttttgtggtgacactt--tttcccttttgttccagTGCCTTCCATTTAAGTTACAACATGCTTCTGAATCAAATGCGATCTGAGGATGGTGATCCTGAAAAGTTGCTTCGCAATTCATTCTATCAATTTCAAGCA
||| ||| || | | | ||| |||| || | | || ||| || | | |||| || | | | | |||||| |||||||| |||||||||||||| || ||||| ||||| ||| || || |||| || || | || || || || |||| |||||
gtgatcgctattttttttattttacatggtttgttttctgctaaataattatcgaaaaggctggggcgtggaatacatttgcgtgaatcatatg--ttccttcttttttcattatcactttgccctttactataattcttgtacagtacgtttctagcactaaattgacttgtgatgacagTGCGTTCCATTTGAGTTACAACATGCTGCTCAATCAGATGCGGAGTGAAGAAAGTAATCCGGAGGAGCTCCTCCGACGGTCTTTTCATCAGTTTCAGTGT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tattgttttgctttctgtggtgttttgtggtgacactttttcccttttgttccagTGCCTTCCATTTAAGTTACAACATGCTTCTGAATCAAATGCGATCTGAGGATGGTGATCCTGAAAAGTTGCTTCGCAATTCATTCTATCAATTTCAAGCA
cactttttcccttttg CT-rich tract
acttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
acaaaagaactatacaatttgatccctcgatcagccaagaattgctattgttttgctttctgtggtgttttgtggtgacactttttcccttttgttccagTGCCTTCCATTTAAGTTACAACATGCTTCTGAATCAAATGCGATCTGAGGATGGTGATCCTGAAAAGTTGCTTCGCAATTCATTCTATCAATTTCAAGCA
- aaaagaa
- - - - - - - - - - -atccctc
- - - - - - - - - - - - - - - - - ccaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtgtt