1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aaaataacctaaatagaaattctaatgggctctggatattccttttccatactttaataaaatgttgttgtgactggaatgtgtttttatccatgctcagCCACCTGAAGGATGGAATGGTGGTGTTGGGTTCGTGTCAAAGGAAATGATTCAAACCCACTGCCCACCTCCAGCAACCAATATTCAG
species | Vitis vinifera |
transcript | Vv06s0009g01710.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGCTGCTAACTTTCCAAACCGCTTCACTGTCTATTATGTTCTGAATCAG CCACCTGAAGGATGGAATGGTGGAGTTGGGTTCGTGTCAAAGGAAATGATTEST: gi|110401612|gb|EC968227.1|EC968227
genomic: TTGCTGCTAACTTTCCAAACCGCTTCACTGTCTATTATGTTCTGAATCAGgtactactaa ... ccatgctcagCCACCTGAAGGATGGAATGGTGGTGTTGGGTTCGTGTCAAAGGAAATGATT
EST: TTGCTGCTAACTTTCCAAACCGCTTCACTGTCTATTATGTTCTGAATCAG CCACCTGAAGGATGGAATGGTGGAGTTGGGTTCGTGTCAAAGGAAATGATTEST: gi|33406066|gb|CF211693.1|CF211693
genomic: TTGCTGCTAACTTTCCAAACCGCTTCACTGTCTATTATGTTCTGAATCAGgtactactaa ... ccatgctcagCCACCTGAAGGATGGAATGGTGGTGTTGGGTTCGTGTCAAAGGAAATGATT
EST: TTGCTGCTAACTTTCCAAACCGCTTCACTGTCTATTATGTTCTGAATCAG CCACCTGAAGGATGGAATGGTGGAGTTGGGTTCGTGTCAAAGGAAATGATTEST: gi|33405978|gb|CF211605.1|CF211605
genomic: TTGCTGCTAACTTTCCAAACCGCTTCACTGTCTATTATGTTCTGAATCAGgtactactaa ... ccatgctcagCCACCTGAAGGATGGAATGGTGGTGTTGGGTTCGTGTCAAAGGAAATGATT
EST: TTGCTGCTAACTTTCCAAACCGCTTCACTGTTTATTATGTTCTGAATCAG CCACCTGAAGGATGGAATGGTGGAGTTGGGTTCGTGTCAAAGGAAATGATT
genomic: TTGCTGCTAACTTTCCAAACCGCTTCACTGTCTATTATGTTCTGAATCAGgtactactaa ... ccatgctcagCCACCTGAAGGATGGAATGGTGGTGTTGGGTTCGTGTCAAAGGAAATGATT
tccatactttaataaaatgttgttgtgactggaatgtgtttttatccatgctcagCCACCTGAAGGATGGAATGGTGGTGTTGGGTTCGTGTCAAAGGAAATGATTCAAACCCACTGCCCACCTCCAGCAACCAATATTCAG
ctttaat putative branch site (score: 4)
tttttatcc putative PPT
tttaataaaatgttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaataacctaaatagaaattctaatgggctctggatattccttttccatactttaataaaatgttgttgtgactggaatgtgtttttatccatgctcagCCACCTGAAGGATGGAATGGTGGTGTTGGGTTCGTGTCAAAGGAAATGATTCAAACCCACTGCCCACCTCCAGCAACCAATATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
aaaataa
- - - - - -aatagaa
- - - - - - - - - - -ctaatgg
- - - - - - - - - - - - - - -ctctgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaatgtg