1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttcaatgatgaaaacatagataatgtagatactggaatacaataaaataaaaatttcaagaaacatacttgtaactcatgctttatggattttaaaacagGCGTTGATCCTATCTAGACTTCTTGGAAGGCGGGTTAACTTAGATAGCCTTAAG
species | Vitis vinifera |
transcript | Vv06s0009g01460.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATCCGCGTGATGACCTAAGTGGGATGGATGTTGCAAGAAAG GCGTTGATCCTATCTAGACTTCTTGGAAGGCGGGTTAACTTAGATAGCCTTEST: gi|110409000|gb|EC974653.1|EC974653
genomic: ATCCGCGTGATGACCTAAGTGGGATGGATGTTGCAAGAAAGgtttgtaaat ... tttaaaacagGCGTTGATCCTATCTAGACTTCTTGGAAGGCGGGTTAACTTAGATAGCCTT
EST: ATCCGCGTGATGACCTAAGTGGGATGGATGTTGCAAGAAAG GCGTTGATCCTATCTAGACTTCTTGGAAGGCGGGTTAACTTAGATAGCCTT
genomic: ATCCGCGTGATGACCTAAGTGGGATGGATGTTGCAAGAAAGgtttgtaaat ... tttaaaacagGCGTTGATCCTATCTAGACTTCTTGGAAGGCGGGTTAACTTAGATAGCCTT
aataaaaatttcaagaaacatacttgtaactcatgctttatggattttaaaacagGCGTTGATCCTATCTAGACTTCTTGGAAGGCGGGTTAACTTAGATAGCCTTAAG
ttgtaac putative branch site (score: 2)
tttatggattttaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcaatgatgaaaacatagataatgtagatactggaatacaataaaataaaaatttcaagaaacatacttgtaactcatgctttatggattttaaaacagGCGTTGATCCTATCTAGACTTCTTGGAAGGCGGGTTAACTTAGATAGCCTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - -gaaaaca
- - - - - - - - - - - - - - atactgg
- - - - - - - - - - - - - - - - - -aatacaa
- - - - - - - - - - - - - - - - - - - - - -aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcatgc