1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tcaactccataaaatgtaagcttgaatgaagcattttgatatgttatgcttatactgaatgtaaccatttcatttgttgtgtatctattattctatacagAGATTCAAAGTTGCAGTTTTGCTTGTGCACTAGTGAGGGCAAGGTTCCTTGCATTTTCTCCGTGTTCTTGTTGATGTACATTATTGATGGAAGAAATCAT
species | Vitis vinifera |
transcript | Vv06s0009g01050.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATGACTGCAAAAGGAAAATGATGTGGGTGTGTCACACCTCTTATGACCTT AGATTCAAAGTTGCAGTTTTGCTTGTGCACTAGTGAGGGCAAGGTTCCTTGEST: gi|110419539|gb|EC985775.1|EC985775
genomic: ATGACTGCAAAAGGAAAATGATGTGGGTGTGTCACACCTCTTATGACCTTgtaagtgctt ... ttctatacagAGATTCAAAGTTGCAGTTTTGCTTGTGCACTAGTGAGGGCAAGGTTCCTTG
EST: ATGACTGCAAAAGGAAAAAGATGTGGGTGTGTCACACCTCTTATGACCTT AGATTCAAAGTTGCAGTTTTGCTTGTGCACTAGTGAGGGCAAGGTTCCTTGEST: gi|30304322|gb|CB981116.1|CB981116
genomic: ATGACTGCAAAAGGAAAATGATGTGGGTGTGTCACACCTCTTATGACCTTgtaagtgctt ... ttctatacagAGATTCAAAGTTGCAGTTTTGCTTGTGCACTAGTGAGGGCAAGGTTCCTTG
EST: ATGACTGCAAAAGGAAAATGATGTGGGTGTGTCACACCTCTTATGACCTT AGATTCAAAGTTGCAGTTTTGCTTGTGCACTAGTGAGGGCAAGGTTCCTTGEST: gi|77587053|gb|DV222662.1|DV222662
genomic: ATGACTGCAAAAGGAAAATGATGTGGGTGTGTCACACCTCTTATGACCTTgtaagtgctt ... ttctatacagAGATTCAAAGTTGCAGTTTTGCTTGTGCACTAGTGAGGGCAAGGTTCCTTG
EST: ATGACTGCAAAAGGAAAAAGATGTGGGTGTGTCACACCTCTTATGACCTT AGATTCAAAGTTGCAGTTTTGCTTGTGCACTAGTGAGGGCAAGGTTCCTTG
genomic: ATGACTGCAAAAGGAAAATGATGTGGGTGTGTCACACCTCTTATGACCTTgtaagtgctt ... ttctatacagAGATTCAAAGTTGCAGTTTTGCTTGTGCACTAGTGAGGGCAAGGTTCCTTG
atgcttatactgaatgtaaccatttcatttgttgtgtatctattattctatacagAGATTCAAAGTTGCAGTTTTGCTTGTGCACTAGTGAGGGCAAGGTTCCTTGCATTTTCTCCGTGTTCTTGTTGATGTACATTATTGATGGAAGAAATCAT
atgtaac putative branch site (score: 3)
ttattct putative PPT
tatctattattctata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaactccataaaatgtaagcttgaatgaagcattttgatatgttatgcttatactgaatgtaaccatttcatttgttgtgtatctattattctatacagAGATTCAAAGTTGCAGTTTTGCTTGTGCACTAGTGAGGGCAAGGTTCCTTGCATTTTCTCCGTGTTCTTGTTGATGTACATTATTGATGGAAGAAATCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
-caactcc
- - - - ataaaat
- - - - - - - - - - - - - tgaagca
- - - - - - - - - - - - - - - - - - - - - gttatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaacca