Sequence
atgc intronic sequence ATGC exonic sequencegtactttaaacccaaatttcaccaaaccttatgtatcatccatccatttgtgaatcttactgttacttttggttactatttcagATAGACACGTTATCAAAAGTGAACCACAAGAATTTTGTGAACCTTATTGGGTTTTGTGAAGAGGATAAGCCTTTTACGAGAATGATGGTTTTTGAATATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g07030.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA11G29010.1 (Glycine max), 3'ss of exon 6
gtactttaaacccaaatttcaccaaaccttatgtatcatccatccatttgtgaatctta-ctgttacttttggttactatttcagATAGACACGTTATCAAAAGTGAACCACAAGAATTTTGTGAACCTTATTGGGTTTTGTGAAGAGGATAAGCCTTTTACGAGAATGATGGTTTTTGAATATG
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gtacgcagacaacaaatgtagaaaatgcaccactgtttacgatctggtttttgttctaagctttttccttt--tcattattccagATAGAGATGTTGTCAAGAGTGAACCACAAGAATTTTGTGAATCTTATTGGATATTGTGAAGAGAATAAGCCATTCACAAGGATGATGGTTTTTGAGTATG
upper sequence: Vv06s0004g07030.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA18G06670.1 (Glycine max), 3'ss of exon 6
gtactttaaacccaaatttcaccaaaccttatgtatcatccatccatttgtgaatcttactgttacttttggttactatttcagATAGACACGTTATCAAAAGTGAACCACAAGAATTTTGTGAACCTTATTGGGTTTTGTGAAGAGGATAAGCCTTTTACGAGAATGATGGTTTTTGAATATG
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gtatgcagacaacgaatgtag--aaaatgcac-cacagtttttttattttagttctgagctttttccttt--tcatgattccagATAGAGATGTTGTCAAGAGTGAACCACAAGAATTTTGTAAATCTTATTGGATATTGTGAAGAGAATAAGCCATTCACAAGGATGATGGTTTTTGAGTATG
upper sequence: Vv06s0004g07030.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA14G37630.1 (Glycine max), 3'ss of exon 7
gtactttaaacccaaatttcaccaaaccttatgtatcatccatccatttgtgaatcttactgttacttttggttactatttcagATAGACACGTTATCAAAAGTGAACCACAAGAATTTTGTGAACCTTATTGGGTTTTGTGAAGAGGATAAGCCTTTTACGAGAATGATGGTTTTTGAATATG
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gtatgctagcaacaaatgtagcaaa----tgcgcaata-------aattgt-aatcctacttctaatctttgc-atggttgcagATTGCGTCATTATCTAGAGTGAACCACAAGAATTTTGTGAATCTTATTGGGTATTGTGAAGAGAATAAGCCATTCTCAAGAATGATGGTGTTTGAGTACG
upper sequence: Vv06s0004g07030.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA02G39470.2 (Glycine max), 3'ss of exon 7
gtactttaaacccaaatttcaccaaaccttatgtatcatccatccatttgtgaatcttactgttacttttggttactatttcagATAGACACGTTATCAAAAGTGAACCACAAGAATTTTGTGAACCTTATTGGGTTTTGTGAAGAGGATAAGCCTTTTACGAGAATGATGGTTTTTGAATATG
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----------gtaagctagcaacaaatgtagcaaatgcaccataaatt-gtga-tcctacttctaatctttgc-atggttgcagATTGCGACATTATCTAGGGTGAACCACAAGAATTTTGTGAATCTCATTGGGTATTGTGAAGAGAATAAGCCATTCTCAAGAATGATGGTGCTTGAGTATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatgtatcatccatccatttgtgaatcttactgttacttttggttactatttcagATAGACACGTTATCAAAAGTGAACCACAAGAATTTTGTGAACCTTATTGGGTTTTGTGAAGAGGATAAGCCTTTTACGAGAATGATGGTTTTTGAATATG
atcttac putative branch site (score: 3)
ctatttc putative PPT
ttactattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtactttaaacccaaatttcaccaaaccttatgtatcatccatccatttgtgaatcttactgttacttttggttactatttcagATAGACACGTTATCAAAAGTGAACCACAAGAATTTTGTGAACCTTATTGGGTTTTGTGAAGAGGATAAGCCTTTTACGAGAATGATGGTTTTTGAATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT