Sequence
atgc intronic sequence ATGC exonic sequencegtatactggctttttcactatttcaaaaggtctccatttgtctctcaatttaaactattgcttttcagaccttgcattgtatcattctgtcttccttatagGGCTTTGGAAGAGAAGAGGGCTCGTCTGGGTCTAGTGGAATGTGTGAACCATGATCTTTTGCAGCCATACCCTGTTCTCCATGAGAAGCCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g06870.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA03G07420.1 (Glycine max), 3'ss of exon 7
------gtatactggctttttcactatttcaaaaggtctccatttgtctctcaa--tttaaactattgcttttcagaccttgcattgtatcattctgtcttccttatagGGCTTTGGAAGAGAAGAGGGCTCGTCTGGGTCTAGTGGAATGTGTGAACCATGATCTTTTGCAGCCATACCCTGTTCTCCATGAGAAGCCTG
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gttagcttgatatgataatctaaatgtttcaaca---ctttgtttaacctgaaggttttgaatttgggttctctttgttgcacattaaatcttagctgtttcataatagGGCTTTGGAAGAGAAAAGAGCTCGTTTGGGTTTAGTGGAATGTGTGAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTG
upper sequence: Vv06s0004g06870.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA18G43390.1 (Glycine max), 3'ss of exon 7
gtatactggctttttcactatttcaaaaggtctccatttgtctctcaatttaaactattgcttttcagaccttgcattgtatcattctgtcttccttatagGGCTTTGGAAGAGAAGAGGGCTCGTCTGGGTCTAGTGGAATGTGTGAACCATGATCTTTTGCAGCCATACCCTGTTCTCCATGAGAAGCCTG
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gtaatttgattattgcatgtttttgata---ctgtgtctagctggtgttctaa-ttattattcttatttcctaaaattccatt----tgtttta-taatagGGCTTTGGAAGAGAAAAGAGCTCGACTTGGTTTGGTGGAATGCGTCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTG
upper sequence: Vv06s0004g06870.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA07G18500.1 (Glycine max), 3'ss of exon 7
gtatactggctttttcactatttcaaaag--gtctccatttg-tctctcaatttaaactattgcttttcagaccttgcattgtatcattctgtcttccttatagGGCTTTGGAAGAGAAGAGGGCTCGTCTGGGTCTAGTGGAATGTGTGAACCATGATCTTTTGCAGCCATACCCTGTTCTCCATGAGAAGCCTG
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gtaatttgattacttgcatgtttataatactgtgtctagttggtgtgctaattattattgtcatcact-attcttaaaattttat--ttgttttataataacagGGCTTTGGAAGAGAAAAGAGCTCGACTTGGTTTGGTGGAATGCGTCAACCATGAGCTCTTGCAGCCATATCCTGTTTTGCATGAAAAGCCTG
upper sequence: Vv06s0004g06870.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA01G29420.1 (Glycine max), 3'ss of exon 7
gtatactggcttt--ttcactatttcaaaa---ggtctccatttg--tctctcaatttaaactattgcttttcagaccttgcattgtatcattctgtcttccttatagGGCTTTGGAAGAGAAGAGGGCTCGTCTGGGTCTAGTGGAATGTGTGAACCATGATCTTTTGCAGCCATACCCTGTTCTCCATGAGAAGCCTG
|| || | || | | | |||||| | || | | | | | | ||||| | | || | | || ||| || | ||| | ||||||||||||||||||| || ||||| | ||| ||||||||||||| || ||||| || |||| || || |||||||| ||||| |||||||
gttagcttgattcacctaaatgtttcaatacttagtttaaactcgaggttttgaatttgggttctc-tttgttacctgttaaattaaatgttaaccctttcataatagGGCTTTGGAAGAGAAAAGAGCTCGGTTAGGTTTAGTGGAATGTGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatttaaactattgcttttcagaccttgcattgtatcattctgtcttccttatagGGCTTTGGAAGAGAAGAGGGCTCGTCTGGGTCTAGTGGAATGTGTGAACCATGATCTTTTGCAGCCATACCCTGTTCTCCATGAGAAGCCTG
tcattctgtcttcctt CT-rich tract
aaactatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatactggctttttcactatttcaaaaggtctccatttgtctctcaatttaaactattgcttttcagaccttgcattgtatcattctgtcttccttatagGGCTTTGGAAGAGAAGAGGGCTCGTCTGGGTCTAGTGGAATGTGTGAACCATGATCTTTTGCAGCCATACCCTGTTCTCCATGAGAAGCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC