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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgataattgcatcccctgctcgacaaaaagccttaaattctacttggatttttcttgtttaactgcaactagaatggatgtctttgtgtggaacagGAATGGAGCTATTTGAGGGGAGGGCTAACGACGGTTGATCGTGACTATGGATGGTTTAATAGCATCCAACATAACACTGGCACGCATGTTATACACCATC

Basic information

species Vitis vinifera
transcript Vv06s0004g06720.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g06720.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA14G37350.2 (Glycine max), 3'ss of exon 6
gtactgataattgcatcccctgctcgacaaaaagccttaaatt-ctacttggatttttcttgtttaactgcaactagaatggatgtctttgtg-tg---------gaacagGAATGGAGCTATTTGAGGGGAGGGCTAACGACGGTTGATCGTGACTATGGATGGTTTAATAGCATCCAACATAACACTGGCACGCATGTTATACACCATC
        ||    | | |       | |||  |   ||| |  | ||     | || ||| |||  |  || | | ||    ||| |||||| ||         | |||||||||||| ||||| || || || || || || || |||||||||||||| ||| | |||| ||| || ||| ||| |||||| |||||||| |||||||
--------aaccttacctc--aacaaagaaagtgtgataagtggcaacacacgtgttgcttttttggcc-cagcaataacacgtgtttttgtggtgtacaaaaatggacagGAATGGAGTTATTTAAGAGGTGGTCTCACAACTGTGGATCGTGACTATGGTTGGATCAATAACATTCACCATGACATTGGCACCCATGTTATTCACCATC

upper sequence: Vv06s0004g06720.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA02G39230.1 (Glycine max), 3'ss of exon 6
gtactgataattgcatcccctgctcgacaaaaagccttaaatt-ctacttggatttttcttgtttaactgcaactagaatggatgtctttgtg-tg---------gaacagGAATGGAGCTATTTGAGGGGAGGGCTAACGACGGTTGATCGTGACTATGGATGGTTTAATAGCATCCAACATAACACTGGCACGCATGTTATACACCATC
          |  | | ||       | |||  |   ||| |  | ||     | || | | |||  |  || | | ||    ||| |||||| ||         | |||||||||||| ||||| || || || || || || || |||||||||||||| ||| | |||| ||| || ||| ||| |||||| |||||||| |||||||
----------taccttacctcaacaaagaaagtgtggtaagtggcaacacacgtgttgcatttttggcc-cagcaataacacgtgtttttgtggtgtactaaaatggacagGAATGGAGTTATTTAAGAGGTGGCCTCACCACTGTGGATCGTGACTATGGTTGGATCAATAACATTCACCATGACATTGGCACCCATGTTATCCACCATC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttggatttttcttgtttaactgcaactagaatggatgtctttgtgtggaacagGAATGGAGCTATTTGAGGGGAGGGCTAACGACGGTTGATCGTGACTATGGATGGTTTAATAGCATCCAACATAACACTGGCACGCATGTTATACACCATC
               gtttaac  putative branch site (score: 3)
                                       tctttgt  putative PPT
      atttttcttgtttaa  TA-rich tract