Sequence
atgc intronic sequence ATGC exonic sequencegtcagtagtttagtcatgtgtactaggggccttggttgctatttctttcctcagattttgaagttggagtcagtttgaaaatgctgtaatagtttaactttgtttctgtttcagGTTAATCAGAAGATGATGAAATCTGCCCTAATAAAAGATTTGTATTCTGAAATTGATCGGCTTAAGCAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g03810.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA13G40580.1 (Glycine max), 3'ss of exon 7
gtcagtagtttagtcatgtgtactaggggccttggttgctatttctttcctcagattttgaagttggagtcagtttgaaaatgctgtaatagtttaactttgtttctgtttcagGTTAATCAGAAGATGATGAAATCTGCCCTAATAAAAGATTTGTATTCTGAAATTGATCGGCTTAAGCAAG
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----gtgacttttttagttgcccttttcattttgatcaaccttttgctccttttatcaggcagc-agagcatatctaacagt----------ttaaagttggttattttttcagATTAATCAGAAAATGATGAAATCTGCAATGATTAAGGATTTGTATTCTGAAATTGACAGACTAAAGCAAG
upper sequence: Vv06s0004g03810.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA11G15520.2 (Glycine max), 3'ss of exon 6
gtcagtagtttagtcatgtgtactaggggccttggttgctatttctttcctcagattt-tgaagttggagtcagtttgaaaatgctgtaatagttta-actttgtttctgtttcagGTTAATCAGAAGATGATGAAATCTGCCCTAATAAAAGATTTGTATTCTGAAATTGATCGGCTTAAGCAAG
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----gtgactt--tcatagttcctactttttttgtcaaccttaccatgctttttttttcttatcacagatttgcagtgcaacatatctaatagtttggagttcaatactttgttagATCAATCAGAAGATGGTGAAATCTGCACTCATAAAGGATCTGTATTCTGAAATTGACAGACTGAAGCAAG
upper sequence: Vv06s0004g03810.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA15G04830.1 (Glycine max), 3'ss of exon 6
gtcagtagtttagtcatgtgtactaggggccttggttgctatttctttcctcagat------tttgaagttggagtcagtttgaaaatgctgt--aatagtttaactttgttt-ctgtttcagGTTAATCAGAAGATGATGAAATCTGCCCTAATAAAAGATTTGTATTCTGAAATTGATCGGCTTAAGCAAG
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-------------------------gtgacttttatagttgctcctttattttgatcaaccttttgctccttttatcaggcagcagagcatatctaatagtttaaagttgcttattttttcagATTAATCAGAAAATGATGAAATCTGCAATGATTAAGGATTTGTATTCAGAAATTGACAGACTAAAGCAAG
upper sequence: Vv06s0004g03810.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA12G07910.1 (Glycine max), 3'ss of exon 6
gtcagtagtttagtcatgtgtactaggggccttggttgctatttctttcctcagattttgaagttggagtcagtttgaaaatgctgtaatagttta-actttgtttctgtttcagGTTAATCAGAAGATGATGAAATCTGCCCTAATAAAAGATTTGTATTCTGAAATTGATCGGCTTAAGCAAG
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----gtgactc--tcatagttcctactttttttgtcaacc-ttaccatgctttttttcttatcacagatccgcaatgcaacatatctaatagtttggagttcaatactttgttagATCAATCAAAAGATGGTGAAATCTGCACTCATTAAGGATCTGTATTCTGAAATTGAAAGACTGAAGCAAG
upper sequence: Vv06s0004g03810.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT2G28620.1 (Arabidopsis thaliana), 3'ss of exon 6
gtcagtagtttagtcatgtgtactaggggccttggttgctatttctttcctcagat-tttgaagttggagtcagtttgaaaatgctgtaatagtttaactttgtttctgt-ttcagGTTAATCAGAAGATGATGAAATCTGCCCTAATAAAAGATTTGTATTCTGAAATTGATCGGCTTAAGCAAG
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---------------------------------------------gtctgtcaaacatatgctgctctattatttctgccagtttagttgta--ttaacacaccttctgcattcagGTTAACCAGAAGATGATGAAATCAGCTATTATGAAAGATTTGTATTCTGAAATTGAACGTCTGAAGCAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122690251|gb|EC949944.1|EC949944EST: GCACTCTGGATTATGCACACCGTGCCAAAAATATCAAGAACAAGCCAGAG GTTAATCAGAAGATGATGAAATCTGCCCTAATAAAAGATTTGTATTCTGAA
genomic: GCACTCTGGATTATGCACACCGTGCCAAAAATATCAAGAACAAGCCAGAGgtcagtagtt ... tctgtttcagGTTAATCAGAAGATGATGAAATCTGCCCTAATAAAAGATTTGTATTCTGAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaagttggagtcagtttgaaaatgctgtaatagtttaactttgtttctgtttcagGTTAATCAGAAGATGATGAAATCTGCCCTAATAAAAGATTTGTATTCTGAAATTGATCGGCTTAAGCAAG
gtttaac putative branch site (score: 3)
ctttgtttctgtttc CT-rich tract
taatagtttaacttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcagtagtttagtcatgtgtactaggggccttggttgctatttctttcctcagattttgaagttggagtcagtttgaaaatgctgtaatagtttaactttgtttctgtttcagGTTAATCAGAAGATGATGAAATCTGCCCTAATAAAAGATTTGTATTCTGAAATTGATCGGCTTAAGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG