Sequence
atgc intronic sequence ATGC exonic sequence...acaagatttattccatgattcgtctgaaaaatattcgacaatgctgaaacattcaattcattacaatttttttttaaaatttttatttttggatttatagGTTCCTCCAAGGCCCTGAGACAGATCCTGCGACAGTGAGGAAAATCAGAGAGGCAATTGACAACCAAACAGATGTTACTGTGCAGCTAATTAACTACACA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g03700.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA12G07890.1 (Glycine max), 3'ss of exon 8
acaagatttattccatgattcgtctgaaaa---atattcgacaatg----ctgaaacattcaattcattacaatttttttttaaaatttttatttttggatttatagGTTCCTCCAAGGCCCTGAGACAGATCCTGCGACAGTGAGGAAAATCAGAGAGGCAATTGACAACCAAACAGATGTTACTGTGCAGCTAATTAACTACACA
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-------ttgtttgtaaaagcttccgaagactgatataccaggatatgatctggaaggtgttgccgaaaatcagtggtatttatttatattctacttggtgatatagGTTTTTGCAAGGCCCTGAAACTGATCCAGCAACAGTGAGAAAAATTAGAGAGGCTATTGACAATCAAACTGACGTTACCGTGCAGCTTATTAATTATACG
upper sequence: Vv06s0004g03700.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA13G40550.1 (Glycine max), 3'ss of exon 6
--------------------------------------------------------------------------------------acaagatttattccatgattcgtctgaaaaatattcgacaatgctgaaacattcaattcattacaattt----ttttttaaaatttttatt-tttggatttatagGTTCCTCCAAGGCCCTGAGACAGATCCTGCGACAGTGAGGAAAATCAGAGAGGCAATTGACAACCAAACAGATGTTACTGTGCAGCTAATTAACTACACA
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gtattctttaaattgaatgttattacacggcaagtatacttatgctagatggaagccgctggtgattcaaatttaaattcctttctgaaagtttaataatattgatttaccaggaaatgatcaa-aatttcgtttc-tataattaatgtcaaattcaggttatttaccttatatgctatttggctatttagGTTTCTGCAAGGACCTGAAACTGATCCAGCAACTGTGAACAAAATTAGAGAGGCAATTGACAACCAAACAGAAGTTACCGTGCAACTAATCAATTATACA
upper sequence: Vv06s0004g03700.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA15G04850.1 (Glycine max), 3'ss of exon 6
-------------------------------------------------------------------------------------acaagatttatt--ccatgattcgtctgaaaa--atattcgacaatgctgaaacattcaat-tca---ttacaatttttttttaaaatttttatttttggatttatagGTTCCTCCAAGGCCCTGAGACAGATCCTGCGACAGTGAGGAAAATCAGAGAGGCAATTGACAACCAAACAGATGTTACTGTGCAGCTAATTAACTACACA
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gtattctttaaattgaatgacattacacgtcaagtatacttatgctagatggaagctgctggtgattccaatttaaattcctttctgaaaatttaatagtattgatttacctggaaatgataaaaaatatcgtttctataatcaatgtcaaattcagggtatttaccttatatgct-atttgtctattta--gGTTTCTGCAAGGACCTGAAACTGATCCGGCAACTGTGAGAAAAATTAGAGAGGCAATTGACAATCAAACGGAAGTTACCGTGCAACTGATCAATTATACA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaaacattcaattcattacaatttttttttaaaatttttatttttggatttatagGTTCCTCCAAGGCCCTGAGACAGATCCTGCGACAGTGAGGAAAATCAGAGAGGCAATTGACAACCAAACAGATGTTACTGTGCAGCTAATTAACTACACA
attcaattcattacaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
acaagatttattccatgattcgtctgaaaaatattcgacaatgctgaaacattcaattcattacaatttttttttaaaatttttatttttggatttatagGTTCCTCCAAGGCCCTGAGACAGATCCTGCGACAGTGAGGAAAATCAGAGAGGCAATTGACAACCAAACAGATGTTACTGTGCAGCTAATTAACTACACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - ccatgat
- - - - - - - - - - - - - aaaaata
- - - - - - - - - - - - - - - - - - - caatgct
- - - - - - - - - - - - - - - - - - - - - - -gaaacat
- - - - - - - - - - - - - - - - - - - - - - - - - - -caattca