1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtctttttctcatttaatcccttttcatctttggattatctccaaattgcttttgtgtatcttggatttctgaacttattttcatagGTACACATGCTGGATATGGAGTGTTTTTCATATTTGAATCGTGCTCTAGAGAGCTCACTGTCTCCAATAGTAATTTTCGCTACAAATAGGGGAATATGTA
species | Vitis vinifera |
transcript | Vv06s0004g02910.t01 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCGATGAAGGTGTGGCAGAGCTTGTTCCTGGGGTCCTATTTATTGATGAG GTACACATGCTGGATATGGAGTGTTTTTCATATTTGAATCGTGCTCTAGAGEST: gi|71885171|gb|DT034226.1|DT034226
genomic: TCGATGAAGGTGTGGCAGAGCTTGTTCCTGGGGTCCTATTTATTGATGAGgtctttttct ... attttcatagGTACACATGCTGGATATGGAGTGTTTTTCATATTTGAATCGTGCTCTAGAG
EST: TCGATGAAGGTGTGGCAGAGCTTGTTCCTGGGGTCCTATTTATTGATGAG GTACACATGCTGGATATGGAGTGTTTTTCATATTTGAATCGTGCTCTAGAGEST: gi|110689388|gb|EE065570.1|EE065570
genomic: TCGATGAAGGTGTGGCAGAGCTTGTTCCTGGGGTCCTATTTATTGATGAGgtctttttct ... attttcatagGTACACATGCTGGATATGGAGTGTTTTTCATATTTGAATCGTGCTCTAGAG
EST: TCGATGAAGGTGTGGCAGAGCTTGTTCCTGGGGTCCTATTTATTGATGAG GTACACATGCTGGATATGGAGTGTTTTTCATATTTGAATCGTGCTCTAGAGEST: gi|71863654|gb|DT012709.1|DT012709
genomic: TCGATGAAGGTGTGGCAGAGCTTGTTCCTGGGGTCCTATTTATTGATGAGgtctttttct ... attttcatagGTACACATGCTGGATATGGAGTGTTTTTCATATTTGAATCGTGCTCTAGAG
EST: TCGATGAAGGTGTGGCAGAGCTTGTTCCTGGGGTCCTATTTATTGATGAG GTACACATGCTGGATATGGAGTGTTTTTCATATTTGAATCGTGCTCTAGAGEST: gi|71865178|gb|DT014233.1|DT014233
genomic: TCGATGAAGGTGTGGCAGAGCTTGTTCCTGGGGTCCTATTTATTGATGAGgtctttttct ... attttcatagGTACACATGCTGGATATGGAGTGTTTTTCATATTTGAATCGTGCTCTAGAG
EST: TCGATGAAGGTGTGGCAGAGCTTGTTCCTGGGGTCCTATTTATTGATGAG GTACACATGCTGGATATGGAGTGTTTTTCATATTTGAATCGTGCTCTAGAG
genomic: TCGATGAAGGTGTGGCAGAGCTTGTTCCTGGGGTCCTATTTATTGATGAGgtctttttct ... attttcatagGTACACATGCTGGATATGGAGTGTTTTTCATATTTGAATCGTGCTCTAGAG
ggattatctccaaattgcttttgtgtatcttggatttctgaacttattttcatagGTACACATGCTGGATATGGAGTGTTTTTCATATTTGAATCGTGCTCTAGAGAGCTCACTGTCTCCAATAGTAATTTTCGCTACAAATAGGGGAATATGTA
cttattttc CT-rich tract
aacttattttcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctttttctcatttaatcccttttcatctttggattatctccaaattgcttttgtgtatcttggatttctgaacttattttcatagGTACACATGCTGGATATGGAGTGTTTTTCATATTTGAATCGTGCTCTAGAGAGCTCACTGTCTCCAATAGTAATTTTCGCTACAAATAGGGGAATATGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA