Sequence
atgc intronic sequence ATGC exonic sequencegtcagtaactaagattaactgatgttttaagcggtagtctctctattgcaagatcttggatatgatatatatatatatggttaatttgtttcttgattatcactcaatgcagGTTTTGGTTCGGCTTGTAGGAGCCGATGATCATGTGTATCCCAATTTTATGGATGTGATGCAATGGTTAGCTGAGAGCAACTTACTAGAAATGATTGTGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g02770.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA12G08100.1 (Glycine max), 3'ss of exon 7
gtcagtaactaagattaactgatgttttaagcggtagtctctctattgcaagatcttggatatgatatatatat-atatggttaatttgtttcttgatta--tcactcaatgcagGTTTTGGTTCGGCTTGTAGGAGCCGATGATCATGTGTATCCCAATTTTATGGATGTGATGCAATGGTTAGCTGAGAGCAACTTACTAGAAATGATTGTGG
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--------------------------gtaaaca-tcgtctagtagtcataatattattgagatcttgctaatgtgacgtactagaatgggtcctaaattaattttctttgcacagGTTTTGGTTCGATTAGTAGGTGCTGATGACCATGTATATCCCAATTTTATAGATGTGATGCAATGGTTAGCTGAGAGCAACCTGCTTGAGATGATTGTCG
upper sequence: Vv06s0004g02770.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA11G20500.1 (Glycine max), 3'ss of exon 7
gtcagtaactaagattaactgatgttttaagcggtagtctctctattgc-aagatcttggatatgatatatatatatatggttaatttgtttcttgattat-cactcaatgcagGTTTTGGTTCGGCTTGTAGGAGCCGATGATCATGTGTATCCCAATTTTATGGATGTGATGCAATGGTTAGCTGAGAGCAACTTACTAGAAATGATTGTGG
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--------------gtaaacatctatctatctagtagttataatattattgagatcttgc---taatatg-----acgtgctagaaggggtcctaaattttgttctttgcacagGTTTTGGTTCGATTAGTAGGTGCTGATGACCATGTATATCCCAATTTTATAGATGTGATGCAATGGTTGGCTGAGAGCAACCTGCTTGAGATGATTGTCG
upper sequence: Vv06s0004g02770.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA12G29710.1 (Glycine max), 3'ss of exon 7
gtcagtaactaagattaactgatgttttaagcggtagtctctctattgc-aagatcttg--gatatgatatatatatatatggttaatttgtttcttgattatcactcaatgcagGTTTTGGTTCGGCTTGTAGGAGCCGATGATCATGTGTATCCCAATTTTATGGATGTGATGCAATGGTTAGCTGAGAGCAACTTACTAGAAATGATTGTGG
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--------gtaaactt---ttacctcttcagtagtaattatgacaatgctgagatcttgctgatgtgccaaaagggattctga--gataagttctttg-------------gcagGTTTTGGTTCGATTGGTAGGCGCTGATGACCATATGTATCACAATTTTATAGATGTGATGCAATGGTTGGCTGAGAGCAACCTGCTTGAGATGATTGTTC
upper sequence: Vv06s0004g02770.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA13G40050.1 (Glycine max), 3'ss of exon 7
gtcagtaactaagattaactgatgttttaagcggtagtctctctattgcaagatcttggatatgatatatatatatatggttaatttgtttcttgattatcactcaatgcagGTTTTGGTTCGGCTTGTAGGAGCCGATGATCATGTGTATCCCAATTTTATGGATGTGATGCAATGGTTAGCTGAGAGCAACTTACTAGAAATGATTGTGG
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--------gtaaactt--ttaccatttcagtagttattatgacaattctgagatcttgctgatg-tatcaaaatggattctgagataagttctttg------------acagGTTTTGGTTCGATTGGTAGGCGCTGATGACCACATGTATCACAATTTTATAGATGTGATGCAATGGTTGGCTGAGAGCAACCTGCTTGAGATGATTGTTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggatatgatatatatatatatggttaatttgtttcttgattatcactcaatgcagGTTTTGGTTCGGCTTGTAGGAGCCGATGATCATGTGTATCCCAATTTTATGGATGTGATGCAATGGTTAGCTGAGAGCAACTTACTAGAAATGATTGTGG
tcttgat putative branch site (score: 4)
atatatatatatatgg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcagtaactaagattaactgatgttttaagcggtagtctctctattgcaagatcttggatatgatatatatatatatggttaatttgtttcttgattatcactcaatgcagGTTTTGGTTCGGCTTGTAGGAGCCGATGATCATGTGTATCCCAATTTTATGGATGTGATGCAATGGTTAGCTGAGAGCAACTTACTAGAAATGATTGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA