Sequence
atgc intronic sequence ATGC exonic sequencegtgacattttctttacttgaattttttcatggtaatatccttagcagcttgatgtttcttttttcaggttttctgttgaatgttttgggatgaaataatcatgaaacaatgttacttgatgtagGTCGGATTTACAAATGATGGGAAGGTTCAGGCTTTGGATCTTGAAATCTACAACAATGGTGGAAACTCGCTGGACCTGTCTGGTGCTGTCCTTGAACGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g02030.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA13G41520.1 (Glycine max), 3'ss of exon 8
gtgacattttctttacttgaattttttcatggtaatatccttagcagcttgatgtttcttttttcaggttttctgttgaatgttttgggatgaa---ataatcatgaaacaatgttacttgatgtagGTCGGATTTACAAATGATGGGAAGGTTCAGGCTTTGGATCTTGAAATCTACAACAATGGTGGAAACTCGCTGGACCTGTCTGGTGCTGTCCTTGAACGTG
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--------------------------gcaggatagggatgaccgcaa-ttaaggcggctttcccacaattgttttcatcattttttcacatgaatgagtaattaatgagagatattatttgattcagGTTGGATTTACAAATGAAGGGAGGGTGCTTGCGCTGGATCTTGAAATTTATAACAATGCTGGAAACTCACTGGATCTGTCGCTTGCTATCCTTGAACGTG
upper sequence: Vv06s0004g02030.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA15G03870.1 (Glycine max), 3'ss of exon 7
gtgacattttctttacttgaattttttcatggtaatatccttagcagcttgatgtttctt-ttttcaggttttctgttgaatgttttgggatgaaataatcatgaaacaatgttacttgatgtagGTCGGATTTACAAATGATGGGAAGGTTCAGGCTTTGGATCTTGAAATCTACAACAATGGTGGAAACTCGCTGGACCTGTCTGGTGCTGTCCTTGAACGTG
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-----------------------taggggtgaccgcaattaaggcggctttcccacaattattttcatcattttttcacatcatcacatggttgagtgatta--atgcgatattatttgattcagGTTGGATTTACAAATGAAGGGAGGGTGCTTGCGCTGGATCTTGAAATTTATAACAATGCTGGAAACTCACTGGATCTATCGCTTGCTATCCTTGAACGTG
upper sequence: Vv06s0004g02030.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT4G34900.1 (Arabidopsis thaliana), 3'ss of exon 7
----------------gtgacattttctttacttgaattttttcatggtaat--atccttagcagctt-------gatgtttc----ttttttcaggttttctgttgaatg--------ttttgggatgaaataatcatgaaac---aatgttacttgatgt-----agGTCGGATTTACAAATGATGGGAAGGTTCAGGCTTTGGATCTTGAAATCTACAACAATGGTGGAAACTCGCTGGACCTGTCTGGTGCTGTCCTTGAACGTG
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gtatctttctctgttgtttccagctttttcccttgaatttttaggcagtggccattaatgagcggccaatcaaaaaatgactgaaaacagttgaaagtagaagaaagagtgggaatagattgttagacaaactaatcattccttttaaatgtgctctgctatcttacagGTTGGATTTACGAACGAAGGGAAAATATTGGCGTTGGACCTTGAAATCTACAACAATGGTGGAAACTCTATGGATCTCTCTCTTTCTAATCTTGAACGTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttctgttgaatgttttgggatgaaataatcatgaaacaatgttacttgatgtagGTCGGATTTACAAATGATGGGAAGGTTCAGGCTTTGGATCTTGAAATCTACAACAATGGTGGAAACTCGCTGGACCTGTCTGGTGCTGTCCTTGAACGTG
acttgat putative branch site (score: 5)
aaataatcatgaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgacattttctttacttgaattttttcatggtaatatccttagcagcttgatgtttcttttttcaggttttctgttgaatgttttgggatgaaataatcatgaaacaatgttacttgatgtagGTCGGATTTACAAATGATGGGAAGGTTCAGGCTTTGGATCTTGAAATCTACAACAATGGTGGAAACTCGCTGGACCTGTCTGGTGCTGTCCTTGAACGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA