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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtagtttgaacaaggaccatttcttttaagtcttctacttgcaaacatctagatattggcaccaatttaaccgaattacaggataatttacaagaacaaggtgcaattattcttgataaatcccaaaactgactgtgtagGTACTGAGGAGGAAGCTGCAGAAGCCTATGATATTGCAGCAATAAAGTTCAGAGGCCTTAATGCAGTGACCAACTTTGACATGAATCGATACGATGTGAA

Basic information

species Vitis vinifera
transcript Vv06s0004g01800.t01
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g01800.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA12G06010.1 (Glycine max), 3'ss of exon 8
gtaagtagtttgaacaaggaccatttcttttaagtcttctacttgca-aacatctagatattggcaccaatttaaccgaattacaggataatttacaagaacaaggtgcaattattcttgataaatcccaaaactgactgtgtagGTACTGAGGAGGAAGCTGCAGAAGCCTATGATATTGCAGCAATAAAGTTCAGAGGCCTTAATGCAGTGACCAACTTTGACATGAATCGATACGATGTGAA
                                     |  |||   | || |||| ||  ||   |||||   ||   |||||  | | | |  || |  ||||  |    | ||  |    | | | ||| | |   | |  |||||||||||| || ||||||||||| || || || ||||| |||||||||||||| || || || || || |||||||||||||  || ||||| |||||
-------------------------------------ttgactcagataatatcttga-gttcataccaa---aaaaaaatta--gaaaagtaaaccaacacaaa-tattttgataatatgaacagcacaatatttcat-tacagGTACTGAGGAAGAGGCTGCAGAAGCATACGACATAGCAGCGATAAAGTTCAGAGGTCTCAACGCTGTCACAAACTTTGACATGAGCCGCTACGACGTGAA

upper sequence: Vv06s0004g01800.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT3G20840.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaagtagtttgaacaaggaccatttcttttaagtcttctacttgcaaacatctagatattggcaccaatttaaccgaattacaggataatttacaagaacaaggtgcaattattcttgataaatcccaaaactgactgtgtagGTACTGAGGAGGAAGCTGCAGAAGCCTATGATATTGCAGCAATAAAGTTCAGAGGCCTTAATGCAGTGACCAACTTTGACATGAATCGATACGATGTGAA
                                       ||| ||| || ||| | | ||   |  ||    ||||    |  |  |   |         |||      ||  | | | || |||        |   |||  ||| |||||||| ||||| |||||||| || ||||| || ||||||||||| ||||| |||||||||||||||||||| || || || || ||||| |||||
---------------------------------------tacatgccaaaatcaaaacat-aacttcag---aaccagcctgtataagtgtacggtcctgcaaaccattatcttacgttatcaatatggtttatc-ttgttcagGCACTGAGGAAGAAGCAGCAGAAGCTTACGATATAGCTGCAATAAAGTTTAGAGGACTTAATGCAGTGACCAACTTCGAGATCAACCGGTACGACGTGAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttacaagaacaaggtgcaattattcttgataaatcccaaaactgactgtgtagGTACTGAGGAGGAAGCTGCAGAAGCCTATGATATTGCAGCAATAAAGTTCAGAGGCCTTAATGCAGTGACCAACTTTGACATGAATCGATACGATGTGAA
                                         aactgac  putative branch site (score: 2)
                   aattattcttgataaa  TA-rich tract