Sequence
atgc intronic sequence ATGC exonic sequence...tttttcactcaaaccagcataaaactcttagtgctctgcatttttatgcacgcattgaaatttggttctgtaggacttttgctgagatatgattttgtagGTTTCCCGCAACCTCTTTAGGTGGACAAAAGAAGTGGCATATGCCGATTATTACGAGCGAGCCCTGACAAATGGCATTTTAAGCATTCAAAGAGGAACAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g01650.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os06g41020.1 (Oryza sativa), 3'ss of exon 7
tttttcactcaaaccagcataaaactcttagtgctctgcatttttatgcacgcattgaaatttggttctgtaggacttttgctgagatatgat-tttgtagGTTTCCCGCAACCTCTTTAGGTGGACAAAAGAAGTGGCATATGCCGATTATTACGAGCGAGCCCTGACAAATGGCATTTTAAGCATTCAAAGAGGAACAG
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---gtgattta--tttgttcatgatcatcaatgatcaa-attcctaagtccatttttctttcctagaat-tagatacaaagtgaaaatacaaagtatgcagGTTTCTCGCCACCTATTCAGATGGACAAAGGAAATTGCGTATGCAGATTACTACGAGCGAGCACTGATAAATGGTGTCCTAAGCATTCAGAGAGGAAGAG
upper sequence: Vv06s0004g01650.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA15G03770.1 (Glycine max), 3'ss of exon 7
tttttcactcaaaccagcataaaactcttag---tgctctgcatttttatgcacgcattgaaatttggttctgtaggacttttgctgagatatgattttgtagGTTTCCCGCAACCTCTTTAGGTGGACAAAAGAAGTGGCATATGCCGATTATTACGAGCGAGCCCTGACAAATGGCATTTTAAGCATTCAAAGAGGAACAG
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---tgcacatataacacttgaatatttgtaaataaaccttgatttattatcttgaagcttttacattgtcctctaagtacaagaaagaaaaacaattttccagGTTTCACGCCACTTGTTTACATGGACCAAAAAAGTATCATATGCAGATTATTATGAGCGTGCCTTAACAAATGGTGTATTAAGCATTCAAAGAGGAACAG
upper sequence: Vv06s0004g01650.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA11G14020.1 (Glycine max), 3'ss of exon 7
tttttcactcaaaccagcataaaactcttagtgctctgcattttta--tgcacgcattgaaatttggttctgtaggact--tttgctgagatatgatt-ttgtagGTTTCCCGCAACCTCTTTAGGTGGACAAAAGAAGTGGCATATGCCGATTATTACGAGCGAGCCCTGACAAATGGCATTTTAAGCATTCAAAGAGGAACAG
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----tta-tcacacagtaattcatcgctgcatgttcttcatttacatctgtatgtgtttgtgattgtttccattatcttagcacacaaaaataaaatgatttcagGTTTCGCGCCACCTGTTTAGATGGACCAAAGAAGTCTCTTATGCAGACTATTACGAGCGCGCCTTAACCAATGGTGTGCTCAGCATTCAAAGAGGAACAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgcacgcattgaaatttggttctgtaggacttttgctgagatatgattttgtagGTTTCCCGCAACCTCTTTAGGTGGACAAAAGAAGTGGCATATGCCGATTATTACGAGCGAGCCCTGACAAATGGCATTTTAAGCATTCAAAGAGGAACAG
attgaaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttttcactcaaaccagcataaaactcttagtgctctgcatttttatgcacgcattgaaatttggttctgtaggacttttgctgagatatgattttgtagGTTTCCCGCAACCTCTTTAGGTGGACAAAAGAAGTGGCATATGCCGATTATTACGAGCGAGCCCTGACAAATGGCATTTTAAGCATTCAAAGAGGAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - -caaacca
- - - - - - - - - ataaaac
- - - - - - - - - - - - - - - - gctctgc
- - - - - - - - - - - - - - - - - - - - - - - -gcacgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgtagg